Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01295 ATGGTAGCTATTAAGGTTAAAGTTCacatttttctcttattttcctTTATGATTACAATGTGTTATGGTGAAACCAATCCAAATGATGTCAAAATTCTGAATGATTTCAAGAAAGGGTTGAAGAATCCAGAGCTTCTAAAATGGCCTGATAAAGGTGATGATCCATGTGGTTCAGCTTCATGGAATTATGTGTACTGTTCTAAAGGTAGAGTTACTCAAATTCAAGCTAAGAATCTTGGTCTTATTGGTTCATTGCCTTCAAATTTTAATCAGCTTTCAGAGCTTCAAAATTTAGGTCTTCAAAGAAATAATCTTAGTGGAATGTTACCTAGTTTTAGTGGATTATCTAATTTGCAATATGCTTTTTTAGATTATAATGAATTTGATGGAATCCCTTTAGATTTCTTCAATGGATTGACCAACATTCAGGTTTTGTCTTTGGAAGAAAACCCTTTGTTGAATGCTACTAATGGTTGGTCATTCCCTATGGATTTGAAAAATTCAGCTCAATTAACAACTCTTTCGTTGGCGAGTTGTAATTTGGTTGGTACATTACCTGATTTTCTAGGCACATTGTCTTCATTATCAGAATTGAGGCTTTCAGGTAATAGAATTTCGGGTGAAATTCCGGTTAGTTTTGGTCAATCGTCGATACAGGTTCTATGGTTGAATGATCAACAAGGTGGTGGAATGACAGGTTCTATTGATGTTATTGCTTCAATGACATTTTTGAGACAGGTTTGGTTACACGGAAACAAGTTCACCGGAACAATTCCGTCGAATATTGGAAATCTCACTTCTCTGCAAGATCTTATCCTCAATAGTAATCAACTTGTTGGTTTGATTCCAAATTCATTAGCAAATTTGGAACTTAAAACACTTGATTTAAATAATAACATGTTCGTCGGTCCAATACCAAAGTTTAAGGCTGCAAAAGTATCTTATGATTCTAATTTCTTTTGTCAAACTAAACCTGGTCTTGAATGTGCTTCTGATGTTAATGTCTTGTTGGATTTTCTACATAATGTGAATTATCCATCAAATCTTATTACTAAATGGGTTGGTAATGATCCTTGTGAACAACCATGGTTTGGATTGAGATGCAATAACGCGAAGGAGGTATCGATGATTGCTTTGCCTAATCAAAAGCTTAGTGGTACTTTGAGTCCTTCACTTGCTAAGTTAGTTTCATTACTTCAAATTAAGCTTGCAGGAAACAATTTAAATGGCAAAGTTCCTAGTAATTTTACTGAATTGAAATCATTGACGTTGTTGGATTTGAGTAATAACAATTTTGAACCTCCGCTGCCAAATTTTCATGATGGTGTGAAAGTTATCACTGATGGTAACCCTCTTTTTGTTAATCAACCTAGAACGAGTCCCGTTCCTATTAGCAGTCCACCGCCTTTAAGGGATCCACCTTCACCACACATTGTGTCGCCGCCGCCGCTGCCGTCATCGCCATCGCCATTGCCATCCTCCGTTATTCCACATCCCTCTAGTCAAAGTTCAAGCTCTAATCAATCTAGGAATGTTGAATCAAAGGCTCAACCGAGTAACTCGCATAGATTCAAAACAGTACCTATAGTGTCTGGAGTTGCAGCGGCATTTGTAGCTCTTTTGGTTATTGGTCTCTTAATATGCTGTTGTTTGAAGAAGAAGCAAAAAGGTTCAATTGATGGTTTTAGTTCTGTTGTGTTTAAAACTCAAGATCCATCCGATCCAAACACAATGGTTAAATTTGCCGTGTCAGATAGCAACACTGGGAACTTATCGACAACGACAGGAACATGTTCTCTAACTAGTGGTGAAACCGGAAACTATCATGCAATTGACTCTGGTAACCTTGTCATCTCAGTTCAAGTTATACGCAAGGTGACAAATAACTTTGCTTCTGAAAATGAGCTCGGCCGTGGAGGATTTGGAACAGTTTACAAAGGTGAACTGGAAGATGGAACAAAAATAGCAGTGAAAAGAATGGAATGTGGAATTGTTAGCAGTAAAGGAATTGATGAGTTTCAAGCCGAAATAGATGTTCTTTCGAAGGTTCGGCACCGGCATTTGGTATCCCTTCTAGGCTATTCCATTGAAGGAAATGAGAGGCTTTTAGTTTACGAGTACATGCCTCTTGGCGCTTTAAGCAGACATCTTTTCCATTGGAAAAGCTTGAATTTGGACCCTTTGTCTTGGCCACATAGACTTGCAATAGCACTTGATGTTGCTAGAGGGATGGAATACCTTCACAGTCTTGCTCGACAGACCTTCATCCATCGAGATCTCAAGTCTTCGAATATCCTACTTGGAGATGATATTCGAGCCAAAGTTTCTGATTTTGGTTTGGTGAAACTTGCACCAGATGGTGAAAAGTCTATGGCTACAAGACTTGCTGGAACATTTGGATACCTTGCCCCTGAGTACGCcgTGATGGGGAAAATCACGACTAAAGTGGATGTGTTCAGCTACGGTGTGGTCTTGATGGAACTTCTGACCGGATTAATGGCTCTTGACGAGAACCGACCAGAGGAAAACCGATACTTAGCCGAATGGTTCTGGCAAATCAAATCAGACAAAGAAAAGCTTATGGCTGCCATCGATCCAGCACTTGAAGTAACCGAAGAGACTTTCGAGAGTATTTCCACTGTAGCTGAACTTGCCGGACATTGCACTGCTAGAGAAGCAAATCATAGGCCAGATATGGGACATGCAGTCAAGGTGCTGTCAGAATTAGTAGAGAAATGGAGACCGGTTGATGAAGAATTTGATTATAGCGGTGGCGTTGACTTCGGTCAACCGCTTCCGCAATTGTTGAAAATTTGGAAGGAAGCAGACAGCAAAGATGTGAGTTATACAAGTCTTGAAAATAGTAAAGGAAGTATACCAACTAAGCCTTCTGGTTTTGCAGAATCTTTTAACTCTAATGATGGTAGATGA 2931 0.3879 MVAIKVKVHIFLLFSFMITMCYGETNPNDVKILNDFKKGLKNPELLKWPDKGDDPCGSASWNYVYCSKGRVTQIQAKNLGLIGSLPSNFNQLSELQNLGLQRNNLSGMLPSFSGLSNLQYAFLDYNEFDGIPLDFFNGLTNIQVLSLEENPLLNATNGWSFPMDLKNSAQLTTLSLASCNLVGTLPDFLGTLSSLSELRLSGNRISGEIPVSFGQSSIQVLWLNDQQGGGMTGSIDVIASMTFLRQVWLHGNKFTGTIPSNIGNLTSLQDLILNSNQLVGLIPNSLANLELKTLDLNNNMFVGPIPKFKAAKVSYDSNFFCQTKPGLECASDVNVLLDFLHNVNYPSNLITKWVGNDPCEQPWFGLRCNNAKEVSMIALPNQKLSGTLSPSLAKLVSLLQIKLAGNNLNGKVPSNFTELKSLTLLDLSNNNFEPPLPNFHDGVKVITDGNPLFVNQPRTSPVPISSPPPLRDPPSPHIVSPPPLPSSPSPLPSSVIPHPSSQSSSSNQSRNVESKAQPSNSHRFKTVPIVSGVAAAFVALLVIGLLICCCLKKKQKGSIDGFSSVVFKTQDPSDPNTMVKFAVSDSNTGNLSTTTGTCSLTSGETGNYHAIDSGNLVISVQVIRKVTNNFASENELGRGGFGTVYKGELEDGTKIAVKRMECGIVSSKGIDEFQAEIDVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFHWKSLNLDPLSWPHRLAIALDVARGMEYLHSLARQTFIHRDLKSSNILLGDDIRAKVSDFGLVKLAPDGEKSMATRLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDENRPEENRYLAEWFWQIKSDKEKLMAAIDPALEVTEETFESISTVAELAGHCTAREANHRPDMGHAVKVLSELVEKWRPVDEEFDYSGGVDFGQPLPQLLKIWKEADSKDVSYTSLENSKGSIPTKPSGFAESFNSNDGR 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01295 976 PANTHER OSJNBA0070M12.3 PROTEIN 5 976 - -
Tsu06g01295 976 Gene3D Transferase(Phosphotransferase) domain 1 708 922 - -
Tsu06g01295 976 ProSiteProfiles Protein kinase domain profile. 630 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01295 976 MobiDBLite consensus disorder prediction 461 495 - -
Tsu06g01295 976 Gene3D Ribonuclease Inhibitor 331 456 IPR032675 -
Tsu06g01295 976 Gene3D Ribonuclease Inhibitor 26 326 IPR032675 -
Tsu06g01295 976 SMART serkin_6 630 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01295 976 MobiDBLite consensus disorder prediction 450 521 - -
Tsu06g01295 976 MobiDBLite consensus disorder prediction 496 521 - -
Tsu06g01295 976 Gene3D Phosphorylase Kinase; domain 1 593 707 - -
Tsu06g01295 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
Tsu06g01295 976 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Tsu06g01295 976 PANTHER OSJNBA0070M12.3 PROTEIN 5 976 - -
Tsu06g01295 976 SUPERFAMILY L domain-like 330 439 - -
Tsu06g01295 976 SUPERFAMILY Protein kinase-like (PK-like) 611 906 IPR011009 -
Tsu06g01295 976 SUPERFAMILY L domain-like 25 308 - -
Tsu06g01295 976 SMART LRR_typ_2 115 138 IPR003591 -
Tsu06g01295 976 SMART LRR_typ_2 92 114 IPR003591 -
Tsu06g01295 976 SMART LRR_typ_2 265 288 IPR003591 -
Tsu06g01295 976 SMART LRR_typ_2 419 441 IPR003591 -
Tsu06g01295 976 SMART LRR_typ_2 192 216 IPR003591 -
Tsu06g01295 976 Pfam Protein tyrosine and serine/threonine kinase 633 904 IPR001245 GO:0004672|GO:0006468
Tsu06g01295 976 MobiDBLite consensus disorder prediction 952 976 - -
Tsu06g01295 976 CDD STKc_IRAK 636 909 - -
Tsu06g01295 976 Pfam Leucine rich repeat N-terminal domain 330 369 IPR013210 -
Tsu06g01295 976 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01295 Tsu-Chr6 12232590 12236607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01295 83 909 Receptor kinase-like Gene Family AT1G55610 29.566 7.14e-83 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Tsu06g01295 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01295 - - cam:101505581 1477.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01295 06 12232590 12236607 Tsu06g01295 06 12232590 12236607 ECH