Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01288 ATGGGGTTTTTGCTGAAAGAAGCTTTGAAGACTCTTTGTGCTAGAAATCAGTGGTCTTATGCTGTTTTTTGGAAGATCGGTTGCAATAATTCAAAGCTGTTAATCTGGGAAGATTGCTACTATGAACCCTTACCATCTCATTTCCTTCCACAAACTGTTGGAACGTCTAATTTGCCTTACCGAGATGGGGAAGGATGCTGGTTTTCTTCCGATTCTCAACTAAGGATTCAACAAGACGACAGAGTCGGTTCATTGATTAACAAAATGATGGTGAATAATTCTGTCAATGTTGCTGGTCAAGGGATACTTGGACGGGCAGCATTCACAGGAAATCATCAGTGGATTGTTTTGAACAATTTCGTTAAAAATGCATATCCACCAGAGGTATTAAACGAGGTGCATTGCCAATTTTCAGCTGGAATGCAGACAGTGGCGGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAACTTGGTTCTTTCTTGCCGATAATGGAGAATATCGGATTTGTGAATGATGTGAAGAACTTAATCTTTCAATTGGGATGTGTTCCCGGTGCCCTTCTATCTGAAGACTATTCCGCAAGAATTTCTAATGAAAGACATTCTGGACCGGTGACTGATTGTGTGCCTGTGTCATTTGATCCACAAATCATTACCTCAAACTTCACTCCCTCAGTAGCTAATGGATCTAACCAACCGAGTAATTCATCGCATGGTCCAATGCCTGTTGCTTCTCAACTACCTCCTTTTCGAAGTCGAGAAATAAATAGTAACCGTGGTACTGTATTAACAACTCAATCCCAAAACCTAAACCAGATATTTGATAGCCTTAGCCAACCAAAGGCTCAACGAGAGAATACAACTGTTAAAGCCGAAGCTGAAGTGATACCTGCAAATCTCGATTCTTCATGTCTGCAACGGCGTTCTGTGTCATATAATGCAAGATCTGCATTCAATGAATTAACTGATTCAAATGTATCCAATCTGAATGGTTTCAGCCTTAAACATATGGCGCAACAAAACTTATCAGGTATTGGAAGGCAAAGTCATGGTAACCCTAATATGAATCCATCATCAAGTGGCTTAAATATGTCTCGATCGAAAACGGATGGAGGCCAAATTTATTATCAGAATTCTAACAACACTTCATTTCTTGGAGGAATCCCAATATGTAGTGGGATGAATAATAATCTTCCAAGGACAAATATGATTAACTGCTCGGTTTCAAGCCCTCCCCAATTTTCAACCGCCGGTTATTCCGGAACACAAAAAGTAGAGTTTGGAATTCAAAACAATAATTCAACTAAAGCTGCAAATCACATGCATCTAGAAGGCTTGGATCAGAAGAATCTTCCCAATGATTTAAAGCATGCTCAAGATTCTTTGGCTTCCACGGATCAAAGGATAGATGATTTGCTTGAGGCCCTAAAGAtcccatcatcatcatctcttcACCATGAGGAGCATGTGCCTATGAATGATCACATCCCGGATTTTCTGCGCGATTGCCTAGATAAAGATGTTACTAACCGCCACATGATGAAAACAAATGTTGAACACGAAGAAGCTTGTACTCAACTTTCATCTGGTGATGATGACTTGTTTGATGTCTTGGGCTTGGATTTCAAAAGGAAACTGCTGAGCGGAAACTGGAATACGTTGTTTGCCGATGAAACAGATGCCAGTGAAGAAAAACATGACAAAAAGGCTATATGTAACAATTTTCCGGTTGTAGGTCATGATAATATTTTCCCGGTTAATGAAGCAATATCAAACAACGGCATCTTCTCTGGAACAAAGACTGATCATCTCTTAGATGCTGTGGTCTCGAAGAATCAATCTGCTGCAAATCAGAATTCTGATGAAATGTCTTGCAGGACCACAGTGACAAGGATTAGTACCGCGTCTGTTCTTTCTCCTACCGGAATGCAGATTATGCGCAATCATGTTGGCCAGGGGGCACCATTTGATTTTCCCAAGACGGAGGTTAAAACAGGTGCTGCAGAAACGAGTTCTCTGATTTCTGGCGGCAGCAAAGATAATGTTGGAAACTGTTCTCAAACCACTTCCATATATGGTTCTCAACTTAGTTCGTGGGTGGAAAATAGTAGCACCAATATGAAGCGTGAAAATAGTGTTTCAACTGGATATTCTAAGCGACCAGATGAAGTTAGCAAATCAAATCGTAAAAGGCTTAAACCTGGAGAGAACCCTAGGCCTCGACCCAAAGATCGCCAAATGATTCAAGATCGCGTGAAAGAGTTGCGTGAAATTGTGCCTAATGGAGCAAAATGTAGCATAGATGCTCTTCTTGAACGAACTATCAAACATATGCTTTTCTTGCAAAGTGTGACCAAGCATGCTGACAAGCTGAAACAGACTGGGGAATCAAAGATTATTAGTAAAGAAGGTGGTTTGTTATTAAAAGACAACTTTGAGGGAGGTGCTACATGGGCATATGAGGTTGGTTCACAATCTATGGTTTGCCCTATCATAGTTGAAGATCTTAATCATCCCCGTCAGATGCTAGTGGAGGTAATGACCGACCCGattcttgataattttgtaaagtgttttgcccctaatataattttgttaccTTTTTAA 2607 0.3974 MGFLLKEALKTLCARNQWSYAVFWKIGCNNSKLLIWEDCYYEPLPSHFLPQTVGTSNLPYRDGEGCWFSSDSQLRIQQDDRVGSLINKMMVNNSVNVAGQGILGRAAFTGNHQWIVLNNFVKNAYPPEVLNEVHCQFSAGMQTVAVIPVLPHGVVQLGSFLPIMENIGFVNDVKNLIFQLGCVPGALLSEDYSARISNERHSGPVTDCVPVSFDPQIITSNFTPSVANGSNQPSNSSHGPMPVASQLPPFRSREINSNRGTVLTTQSQNLNQIFDSLSQPKAQRENTTVKAEAEVIPANLDSSCLQRRSVSYNARSAFNELTDSNVSNLNGFSLKHMAQQNLSGIGRQSHGNPNMNPSSSGLNMSRSKTDGGQIYYQNSNNTSFLGGIPICSGMNNNLPRTNMINCSVSSPPQFSTAGYSGTQKVEFGIQNNNSTKAANHMHLEGLDQKNLPNDLKHAQDSLASTDQRIDDLLEALKIPSSSSLHHEEHVPMNDHIPDFLRDCLDKDVTNRHMMKTNVEHEEACTQLSSGDDDLFDVLGLDFKRKLLSGNWNTLFADETDASEEKHDKKAICNNFPVVGHDNIFPVNEAISNNGIFSGTKTDHLLDAVVSKNQSAANQNSDEMSCRTTVTRISTASVLSPTGMQIMRNHVGQGAPFDFPKTEVKTGAAETSSLISGGSKDNVGNCSQTTSIYGSQLSSWVENSSTNMKRENSVSTGYSKRPDEVSKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIISKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNHPRQMLVEVMTDPILDNFVKCFAPNIILLPF 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01288 868 Coils Coil 455 475 - -
Tsu06g01288 868 MobiDBLite consensus disorder prediction 722 747 - -
Tsu06g01288 868 MobiDBLite consensus disorder prediction 702 721 - -
Tsu06g01288 868 CDD bHLH_AtLHW_like 736 805 - -
Tsu06g01288 868 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 732 781 IPR011598 GO:0046983
Tsu06g01288 868 MobiDBLite consensus disorder prediction 702 747 - -
Tsu06g01288 868 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 176 IPR025610 -
Tsu06g01288 868 MobiDBLite consensus disorder prediction 222 242 - -
Tsu06g01288 868 MobiDBLite consensus disorder prediction 222 248 - -
Tsu06g01288 868 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 848 IPR043561 GO:0003700|GO:0006355
Tsu06g01288 868 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01288 Tsu-Chr6 12173797 12180202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01288 521 849 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 46.903 7.31e-76 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01288 - - aprc:113857443 1142.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01288 06 12173797 12180202 Tsu06g01288 06 12173797 12180202 ECH
Tsu02g04766 02 56793207 56799857 Tsu06g01288 06 12173797 12180202 PCT