Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01286 ATGGGAACGTACTTTCATGGAAATAGCAACAGTTCTGAAATCCAACAACCGTCGGCAGAAGGTTTACAGACACTTTACCTTATGAATCCAAACTACGTACCTTATTCTCAGGAAACTCAAAATCCAACACAAAACATGCTTTTCGCTAATCCCAACGCTACCAACAATACTTCTCCTCACGCGCTTAATCTTGTTAAGTTCCCTCACGCGCCTTCATCATTCAATCAACACCACTTACTTGGAGTTACTATTCCACAATCTAACTTTCTTGGATCCAACACAGCCGACACTCCTTCACAACAGTACCAAGTGACCGGCTTCCATCCCTTTGCCTCGTCGACAACCTCAACTCCTCCTCCCCAGTATAACCTGTGGGGAGTAGGATCAGGTAGTTTAGTACCTAATCAATCTGTCATGGCGACATCAACGGCAACAACTACCGATAGATCGGAGTCTGCTGTTACTGTCGCCGTGACAGCATCTGATGCGGCAGAATTTCCGCCGCCGCCTCATATTGGCTTTCACACGCCGGTTTATCAGCGCGGATTGTCTCTGAGTCTTTCGTCACAACAAACACCTTACCGGTCATTTTCCAGAGATATTGAGGTATCTCCAGGTAGCCGTGGAGGCGGAGAGAACAGCGGAGTTTCGACCATGCACGGTGTTGTTTTCGGGTCAAAATATTTGAAAGTAGCACAAGAGCTTCTTGATGAAGTTGTAAATGTGGATAAGGGAATCATGAAAGGAGAATCTGGTGAAGGAGATAATAGTAATAATGAGAATAAAGAGAAGAGGAAAGCGAATATTGAAGCAAGTTCAAGTGGTGGAAGAGAAAATGATGGAGGGAAACAAGTAGCAGCTGAACTAAGTACTGCACAAAGACAAGAACTTCAAATGAAGAAGTCAAAGCTTGTTACTATGCTTGATGAGGTAGATATACGGTACAAACAATACCACCATCAAATGCAAGGTGTGATATCATCATTTGAACAAGCAGCAGGATATGGAGCAGCAAAGTCTTACACATCCCTTGCTTTAAAGACAATCTCAAAGCAATTTAGAAGTCTTAAAGATGCAATCTCTTCACAAATTAAGACAACTAGCAAGACTTTGGGTGAAGATGATTGCTTAGGAGTTAAGCTAGAAGGTTCTAGGCTTAGGTTTGTCGATCACCATCTTCGACAACAACGGGCTCTACAACAACTCGGAATGATTCAGACCAATGCTTGGAGGCCTCAAAGAGGCTTGCCTGAGCGAGCTGTTTCCGTTCTACGTGCTTGGCTTTTTGAGCATTTCTTGCACCCCTATCCAAAGGACTCGGATAAGGTTATGCTTGCAAGACAAACTGGACTTACTCGGAGTCAGGTGTCTAACTGGTTTATAAATGCTCGAGTTCGGTTGTGGAAACCAATGGTTGAAGAAATGTACTTAGAAGAAACCAAGGAGCAAGAGAAAAATAATGACTCCAATGATAACACAAATATATCCAAAGAATCAAACAAAGAGTTGTGGTCAGCAAATAATACTACACAAGATTCAACTCCCACAAAACATGATCAAATCAATATTCTTCACTCAAAAACTGAAAGCTTCAACAACCAAAACACTTCTCCAACTGAGATATCAAATTCCCATAATTCATTGTCAAcatcaaacacaaattttgatGTTGAAAGAAATCATGACAAAAATGCTTACCCTTTAATGAGTGGAAATGAAAATCATCATGGTGATGGTTATGGATCATTCTCAATGGAAGATATTGGAAGGTTTAATGTTAGTGACCAATTGGCTCCAAGGTTCCATGGAAATGGAGTTTCTCTAACTCTTGGACTACCTCATAATGAAAATCTCCCTTTCTCTTCCACTCAACAAGGATTTCTCTCTCAGAATTTACATTTAGGAGGGAGGATTGAAATGGGAGAGAATGAAAATGAGTTTTGTGCCATTAATACTACTCCACCTTCTTCTCACTCAGGAACAAGTTACGAGAGTATCGATATTCAAAACAGAAAGAGGTTTGCAGCTGCTCAATTGTTGAGAAATTTTGTGAACTAA 2058 0.4082 MGTYFHGNSNSSEIQQPSAEGLQTLYLMNPNYVPYSQETQNPTQNMLFANPNATNNTSPHALNLVKFPHAPSSFNQHHLLGVTIPQSNFLGSNTADTPSQQYQVTGFHPFASSTTSTPPPQYNLWGVGSGSLVPNQSVMATSTATTTDRSESAVTVAVTASDAAEFPPPPHIGFHTPVYQRGLSLSLSSQQTPYRSFSRDIEVSPGSRGGGENSGVSTMHGVVFGSKYLKVAQELLDEVVNVDKGIMKGESGEGDNSNNENKEKRKANIEASSSGGRENDGGKQVAAELSTAQRQELQMKKSKLVTMLDEVDIRYKQYHHQMQGVISSFEQAAGYGAAKSYTSLALKTISKQFRSLKDAISSQIKTTSKTLGEDDCLGVKLEGSRLRFVDHHLRQQRALQQLGMIQTNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQEKNNDSNDNTNISKESNKELWSANNTTQDSTPTKHDQINILHSKTESFNNQNTSPTEISNSHNSLSTSNTNFDVERNHDKNAYPLMSGNENHHGDGYGSFSMEDIGRFNVSDQLAPRFHGNGVSLTLGLPHNENLPFSSTQQGFLSQNLHLGGRIEMGENENEFCAINTTPPSSHSGTSYESIDIQNRKRFAAAQLLRNFVN 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01286 685 Pfam Homeobox KN domain 427 466 IPR008422 GO:0003677|GO:0006355
Tsu06g01286 685 MobiDBLite consensus disorder prediction 528 550 - -
Tsu06g01286 685 MobiDBLite consensus disorder prediction 246 292 - -
Tsu06g01286 685 Pfam Associated with HOX 222 361 IPR006563 -
Tsu06g01286 685 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 556 - -
Tsu06g01286 685 SUPERFAMILY Homeodomain-like 411 476 IPR009057 -
Tsu06g01286 685 Gene3D - 413 493 - -
Tsu06g01286 685 ProSiteProfiles 'Homeobox' domain profile. 407 470 IPR001356 GO:0003677
Tsu06g01286 685 CDD homeodomain 410 471 IPR001356 GO:0003677
Tsu06g01286 685 MobiDBLite consensus disorder prediction 246 271 - -
Tsu06g01286 685 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 9 556 - -
Tsu06g01286 685 SMART prehox3 217 362 IPR006563 -
Tsu06g01286 685 SMART HOX_1 410 474 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01286 Tsu-Chr6 12111860 12117280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01286 1 684 Homeobox Transcription Factor Family AT2G35940 41.953 5.29e-136 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu06g01286 POX 3.4e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01286 - - mtr:MTR_4g051532 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01286 06 12111860 12117280 Tsu06g01286 06 12111860 12117280 ECH