Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01285 ATGCAAAGATCCGGGTACGGTCATGATGGAATATACAGGTCTCTAAGGCCTTCCCTTGTCCTCCCAAAGAACCCCAACCTCTCCCTTGTCGCAAACCTATTCACAAATGTCTCTTCGTTCTCCAACAAAACCGCCATCATTGATGCCGATTCTTCCCAAACCCTCTCCTTCACTCAACTCAAAACACAAGTCGCTAAGCTCGCACATGGTCTCCTCGACCTCGGCATAAACAAAAATGACGTAGTCCTCATTCTTTCCCCCAACAACATTCAATACCCCATTTGTTTCCTTGCTGCCACTGCCATTGGCGCAATAGTCACCACCGCAAATCCAGTTTACACCATCGCGGAACTCTCCAGACAAATCAATGACTCCAATCCTAAATTGATCATCACCGTTCCGGAATTATGGAACAAAGTGAAGGGTTTCAATTTCGACCTCCCTGCAGTGATCATCAGTTCAAGTAACATCACGGCTTCCAATCCTAAGTTCACAAGTTTTGAGACTTTGATGGAAGCAGCAGGGCAAGTAACAGAGTTACCAAAAACAAATGTGAAACAAAGCGATACAGCGGCACTTCTCTACTCATCAGGAACCACGGGCGTTAGCAAAGGCGTAATTCTCACGCACGGGAACTTTATCTCGGCGTCCTTGATGGTTGGCATGGACGATGATTTAGCCGGGGAGTTAAACGGCGTATTCCTATGCGTTTTACCGAtgtttcatgtatttggatTGGCTATTGTAACATACGGGCAACTAAGGCGAGGGAACACGGTGGTGTCAATGGGGAGGTTTGACATGGAGGGATTTTTGAAGGCGATTGAGAGGCATAGAGTGACAAATTTATGGGTGGTGCCTCCAATGGTGCTTGCTTTGGCAAAACAAAATGTGGTTAGTAAATATGATCTTTCGTCATTGAAAGGTATTGGGTCCGGTGCTGCTCCTCTAGGGAAAGATTTGATGGAAGAATGTGCTAGGCGTTTGCCTCATGTTTCTGGCTATGGAATGACAGAAACTTGTGGCATTATTTCTCTAGAGAATCCAAGAGTAGGTATTCGACATACTGGTTCAACTGGAATGTTGGCTTCAGGAGTAGAAGCTCAAATAGTGAGTGTGGACACAAAAAAGTTTCTCCCTCCAAATCATTTAGGAGAATTATTGGTACGTGGTTCCAACATGATGCAAGGTTATCATAACAATCCAGAGGCTACAAAGTTGACTTTAGATAAAGAGGGATGGGTACATACAGGAGACCTTGGATATTTTGATGAGAATGGACAACTTTATATTGTTGATCGTATCAAAGAACTCATCAAGTACAAAGGTTTTCAGGCATCAGAACTTGAAGGTCTTCTTGTTTCTCACCCTGAAATACTAGATGCAGTTGTCATCCCATTTCCTGATGAAGAGGCTGGAGAGGTTCCAATTGCTTATGTTGTTCGTTCACCCAATAGTTCACTTAATAGTGAAGAAGTTCAGAAATTTATTGCAAACCAGGTTGCACCATTCAAAAGATTGAGAAAAGTGACATTCATTAACAGTGTTCCTAAGACAGCTTCTGGAAAGATTCTCAGAAGAGAGCTTATTGCAAAAGCAAAATCCAAAATATAA 1614 0.4275 MQRSGYGHDGIYRSLRPSLVLPKNPNLSLVANLFTNVSSFSNKTAIIDADSSQTLSFTQLKTQVAKLAHGLLDLGINKNDVVLILSPNNIQYPICFLAATAIGAIVTTANPVYTIAELSRQINDSNPKLIITVPELWNKVKGFNFDLPAVIISSSNITASNPKFTSFETLMEAAGQVTELPKTNVKQSDTAALLYSSGTTGVSKGVILTHGNFISASLMVGMDDDLAGELNGVFLCVLPMFHVFGLAIVTYGQLRRGNTVVSMGRFDMEGFLKAIERHRVTNLWVVPPMVLALAKQNVVSKYDLSSLKGIGSGAAPLGKDLMEECARRLPHVSGYGMTETCGIISLENPRVGIRHTGSTGMLASGVEAQIVSVDTKKFLPPNHLGELLVRGSNMMQGYHNNPEATKLTLDKEGWVHTGDLGYFDENGQLYIVDRIKELIKYKGFQASELEGLLVSHPEILDAVVIPFPDEEAGEVPIAYVVRSPNSSLNSEEVQKFIANQVAPFKRLRKVTFINSVPKTASGKILRRELIAKAKSKI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01285 537 CDD 4CL 21 529 - -
Tsu06g01285 537 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 536 - -
Tsu06g01285 537 Gene3D - 9 436 IPR042099 -
Tsu06g01285 537 Pfam AMP-binding enzyme C-terminal domain 448 523 IPR025110 -
Tsu06g01285 537 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 536 - -
Tsu06g01285 537 Pfam AMP-binding enzyme 35 441 IPR000873 -
Tsu06g01285 537 Gene3D - 437 536 IPR045851 -
Tsu06g01285 537 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Tsu06g01285 537 SUPERFAMILY Acetyl-CoA synthetase-like 24 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01285 Tsu-Chr6 12105638 12108970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01285 1 537 Monolignol Biosynthesis Gene Families AT4G05160 67.399 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01285 K01904 - gmx:100808944 804.283