LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu06g01283	ATGAAAGAACCCGTGACAACCGTGACCGGAATAACATACGACCGAGAAAGTATCGAAAAATGGTTGTTGAAGGCCAAGATTTGTGTTTGTCCAGTCACAAACCAATCATTACCAAGAGGTACACAATATTTGACTCCAAATCACACACTTCAAAGGCTAATCAAAGCATGGATTTCATCAAATGAAGCCAAAGGTGTTGGTGAGGATCAAATTTCTTCTCCTAAATCTCCTATCAATAGAATCCAACTTCAAAAGCTTGTCAAGAATCTTGAGGTTCCTCATTGTTATCAAGCATCAATGGAGAAGATTCATGAGCTTGCTAAACAAGGTGAGAGAAATAGAACATGCATGGTTGATATAGGTGTAACAAAAGCTATGGTTATGgtgattaaaaataatttcaaagaAGGAAACACCAATGGTTTAGAAGAAGCTTTGAAAGTTATTCATCTTTTGTGGCATGAAGCAATGATAAAAAACAAGATCAAGCATTTGATTAAAGAAAACATGGATTTCATCAACTCTTTGACttggattttgaaaattaatatgGATAAAAACAATATCAACATGGTAAATGAAGTTATGCCATTATTAAAGTTGAcaattgatgttgttgattCAACCCTTTTAGGAAATTTAAACAATGAATTCTTTAGAGAAATTGTGAGAGTAATTCGAAAGCGAAAATTATTCTCTAAACAAGCTATTAAATCGGCTTTACATGTGCTTGTAGAGGTGTGCCCGTTGGGTAGAAACCGAATGAAGATAGTGGAAGCGGGTGGAGTAACTGAGCTCGTTGAACTCGAGCTTGAAAAACCCGAGAAGAACATGACTGAGCTTGTATTCAACCTTTTGGCACATTTGTGCTCGTGTGCGGAGGGAAGAGAACAATTTTTGCGACATGCAGCAGGTATAGCTATGATTTCGAAAAGGATTTTGAGGGTCTCAGCCGCAACCGATGATTTAGCTATTCAAGTAATTTCAGTGATTGCGAAGTATTCGACTTCGAAAGAGATTGTTTTAGAGATGTTGAGGGTTGGAATGGTTTCGAAGCTTTGCATGGTAATGCAAGCAGATTGTGCTTCATACTTgaaagagaaagctagagaCATACTTAGGTTACACTCAACTTCTTGGAATAATTCTCCTTGTATACAAGTGTATTTGTTAACTAGGCACCAAAGGTGA	1191	0.3518	MKEPVTTVTGITYDRESIEKWLLKAKICVCPVTNQSLPRGTQYLTPNHTLQRLIKAWISSNEAKGVGEDQISSPKSPINRIQLQKLVKNLEVPHCYQASMEKIHELAKQGERNRTCMVDIGVTKAMVMVIKNNFKEGNTNGLEEALKVIHLLWHEAMIKNKIKHLIKENMDFINSLTWILKINMDKNNINMVNEVMPLLKLTIDVVDSTLLGNLNNEFFREIVRVIRKRKLFSKQAIKSALHVLVEVCPLGRNRMKIVEAGGVTELVELELEKPEKNMTELVFNLLAHLCSCAEGREQFLRHAAGIAMISKRILRVSAATDDLAIQVISVIAKYSTSKEIVLEMLRVGMVSKLCMVMQADCASYLKEKARDILRLHSTSWNNSPCIQVYLLTRHQR	396

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu06g01283	396	ProSiteProfiles	U-box domain profile.	1	64	IPR003613	GO:0004842\|GO:0016567
Tsu06g01283	396	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	72	IPR013083	-
Tsu06g01283	396	Gene3D	-	102	379	IPR011989	-
Tsu06g01283	396	SUPERFAMILY	ARM repeat	94	363	IPR016024	-
Tsu06g01283	396	Pfam	U-box domain	1	62	IPR003613	GO:0004842\|GO:0016567
Tsu06g01283	396	SUPERFAMILY	RING/U-box	1	64	-	-
Tsu06g01283	396	PANTHER	WDSAM1 PROTEIN	1	394	IPR045185	GO:0061630
Tsu06g01283	396	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	1	394	-	-
Tsu06g01283	396	SMART	Ubox_2	1	57	IPR003613	GO:0004842\|GO:0016567

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu06g01283	Tsu-Chr6	12084029	12085219	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu06g01283	1	386	U-box Gene Family	AT2G35930	35.897	2.00e-80	251

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu06g01283	-		-	gmx:100811293	530.791

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu06g01283	06	12084029	12085219	Tsu06g01283	06	12084029	12085219	ECH
	Tsu02g04768	02	56838763	56839254	Tsu06g01283	06	12084029	12085219	PCT

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