Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01283 ATGAAAGAACCCGTGACAACCGTGACCGGAATAACATACGACCGAGAAAGTATCGAAAAATGGTTGTTGAAGGCCAAGATTTGTGTTTGTCCAGTCACAAACCAATCATTACCAAGAGGTACACAATATTTGACTCCAAATCACACACTTCAAAGGCTAATCAAAGCATGGATTTCATCAAATGAAGCCAAAGGTGTTGGTGAGGATCAAATTTCTTCTCCTAAATCTCCTATCAATAGAATCCAACTTCAAAAGCTTGTCAAGAATCTTGAGGTTCCTCATTGTTATCAAGCATCAATGGAGAAGATTCATGAGCTTGCTAAACAAGGTGAGAGAAATAGAACATGCATGGTTGATATAGGTGTAACAAAAGCTATGGTTATGgtgattaaaaataatttcaaagaAGGAAACACCAATGGTTTAGAAGAAGCTTTGAAAGTTATTCATCTTTTGTGGCATGAAGCAATGATAAAAAACAAGATCAAGCATTTGATTAAAGAAAACATGGATTTCATCAACTCTTTGACttggattttgaaaattaatatgGATAAAAACAATATCAACATGGTAAATGAAGTTATGCCATTATTAAAGTTGAcaattgatgttgttgattCAACCCTTTTAGGAAATTTAAACAATGAATTCTTTAGAGAAATTGTGAGAGTAATTCGAAAGCGAAAATTATTCTCTAAACAAGCTATTAAATCGGCTTTACATGTGCTTGTAGAGGTGTGCCCGTTGGGTAGAAACCGAATGAAGATAGTGGAAGCGGGTGGAGTAACTGAGCTCGTTGAACTCGAGCTTGAAAAACCCGAGAAGAACATGACTGAGCTTGTATTCAACCTTTTGGCACATTTGTGCTCGTGTGCGGAGGGAAGAGAACAATTTTTGCGACATGCAGCAGGTATAGCTATGATTTCGAAAAGGATTTTGAGGGTCTCAGCCGCAACCGATGATTTAGCTATTCAAGTAATTTCAGTGATTGCGAAGTATTCGACTTCGAAAGAGATTGTTTTAGAGATGTTGAGGGTTGGAATGGTTTCGAAGCTTTGCATGGTAATGCAAGCAGATTGTGCTTCATACTTgaaagagaaagctagagaCATACTTAGGTTACACTCAACTTCTTGGAATAATTCTCCTTGTATACAAGTGTATTTGTTAACTAGGCACCAAAGGTGA 1191 0.3518 MKEPVTTVTGITYDRESIEKWLLKAKICVCPVTNQSLPRGTQYLTPNHTLQRLIKAWISSNEAKGVGEDQISSPKSPINRIQLQKLVKNLEVPHCYQASMEKIHELAKQGERNRTCMVDIGVTKAMVMVIKNNFKEGNTNGLEEALKVIHLLWHEAMIKNKIKHLIKENMDFINSLTWILKINMDKNNINMVNEVMPLLKLTIDVVDSTLLGNLNNEFFREIVRVIRKRKLFSKQAIKSALHVLVEVCPLGRNRMKIVEAGGVTELVELELEKPEKNMTELVFNLLAHLCSCAEGREQFLRHAAGIAMISKRILRVSAATDDLAIQVISVIAKYSTSKEIVLEMLRVGMVSKLCMVMQADCASYLKEKARDILRLHSTSWNNSPCIQVYLLTRHQR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01283 396 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842|GO:0016567
Tsu06g01283 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 72 IPR013083 -
Tsu06g01283 396 Gene3D - 102 379 IPR011989 -
Tsu06g01283 396 SUPERFAMILY ARM repeat 94 363 IPR016024 -
Tsu06g01283 396 Pfam U-box domain 1 62 IPR003613 GO:0004842|GO:0016567
Tsu06g01283 396 SUPERFAMILY RING/U-box 1 64 - -
Tsu06g01283 396 PANTHER WDSAM1 PROTEIN 1 394 IPR045185 GO:0061630
Tsu06g01283 396 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 394 - -
Tsu06g01283 396 SMART Ubox_2 1 57 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01283 Tsu-Chr6 12084029 12085219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01283 1 386 U-box Gene Family AT2G35930 35.897 2.00e-80 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01283 - - gmx:100811293 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01283 06 12084029 12085219 Tsu06g01283 06 12084029 12085219 ECH
Tsu02g04768 02 56838763 56839254 Tsu06g01283 06 12084029 12085219 PCT