Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01278 ATGGATGTTGATTCTTCGATGGTGGCAGAGAACGATCAGGATTCAACGGTGCAGAACAATGAAGATAGAGATAAAATAGGTGAAACGACGCCGTCGTCGTTGTCTCCTTCTAGCGGTGGATCTCCAACGGAGCAACAACCACAGCAGCAAGGTGCGGCAGCGGCTGCCGCTGCTCAGGTGCAGCATAGTCCTGTTGTTGGTCCGAGGCTAGCGCCGTGTTATACAGTGGTGGATGCGATTTTGGAAAAGAAGGAGGATGGACCAGGTCCGCGGTGTGGTCATACGTTGACAGCTGTGCCGGCGGTTGGAGAGGAAGGAACGCCGGGATACATTGGACCAAGGCTGATTTTATTCGGTGGTGCGACGGCGCTTGAAGGGAATTCTGCTGCTTCAGGGACTCCTACATCTGCAGGAAATGCAGGCATACGTTTAGCGGGTGCCACAGCTGACGTCCACTGTTATGATGTCTTGACTAATAAATGGTCTAGGATAACTCCCTTTGGAGAGCCTCCAACCCCAAGGGCTGCACATGTGGCCACTGCTGTGGGAACGATGGTAGTTATTCAGGGTGGCATTGGTCCTGCTGGATTGTCGGCGGAGGACCTTCATGTTCTTGATCTCACACAGCAACGACCGAGATGGCACAGAGTTGGTGTTCCAGGGCCTGGACCAGGGCCACGGTATGGACATGTTATGGCTTTGGTGGGGCAGAGGTATCTCATGGCAATTGGAGGCAATGATGGAAAGAGACCTCTGGCTGATGTATGGGCCTTAGACACAGCTGCCAAGCCTTATGAATGGCGCAAACTGGAGCCAGAAGGAGAGGGCCCGCCTCCATGCATGTATGCAACTGCTAGTGCACGCTCTGATGGGCTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGCGTTCCATTGGCTAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGTTGGGAATGGGCAATTGCCCCCGGTGTTTCACCATCTTCAAGATATCAGCATGCAGCGGTGTTTGTTAATGCAAGGCTCCATGTGTCTGGCGGGGCTCTTGGTGGAGGAAGGATGGTAGAAGATTCGTCGAGTGTTGCAGTGTTGGACACTGCTGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACTAGTCCAAGAGCGGGCAGATACAGTGCTGATGCAGCTGGTGGAGATGCCTCAGTCGAGTTGGTCCGGCGTTGCAGGCACGCAGCTGCTGCTGTCGGTgacctaatttttatttatggcGGTTTACGTGGTGGAATCTTGCTTGACGACCTGCTTGTTGCTGAAGATCTTGCTGCTGCGGAAACAACAAGTGCTGCTTCGCATGCTGCTGCTGCAGCAGCAGCATCTGATGTACAAATGGGACGAGTACCAGGACGATATGGATTTGTTGATGACCGAACAGGGCAAACAATGTCTGATACGACTGCTGATGGTTCAGTTGTTTTGGGAACTCCAGTTGCTGCCCCTGTAAATGGTGACATGTATACTGATATCAGCCCTGAAAATGCCTTGCTTCAGGGGTCTAGGAGAACTAGCAAAGGAGTTGAGTATCTGGTTGAAGCATCTGCCGCAGAAGCTGAAGCTATCAGTGCCACGCTGGCTGCTGCCAAGGCACGGCAAGAGAATGGAGATGTTGAATCACCTGATCGGGACCGCGGGGCTGAGGCTACCCCTAGTGGAAAACAAATATCTTCCATGATTAAGCCTGAACCTGGAGGCCCAAATAGTATTGTGTCTGGTGGAGTCAGGCTGCATCACAGAGCTGTGGTCATTGCCGCTGAGACTGGTGGAGCATTAGGTGGCATGGTTAGGCAGCTTTCGATTGATCAGTTCGAAAATGAAGGCAGACGGGTCAGTTATGGGACTCCAGAAAGTGCAACTGCTGCTAGAAAGCTATTAGATCGGCAGATGTCTATCAATAGTGTCCCAAAAAAGATCATAGCACACCTCTTAAAGCCTCGTGGATGGAAACCACCAGTTCGACGGCAGTTTTTCTTGGATTGCAATGAAATTGCAGATCTTTGTGAAAGTGCGGAGAGGATATTTTCTAGCGAACCAACTGTCATAAAGCTTAGGGCaccaattaaaatatttggTGATTTACATGGGCAATTTGGGGATCTCATGCGCCTCTTTGATGAGTATGGTGCACCATCAACTGCTGGTGACATAGCATATATTGATTATCTATTCCTAGGAGATTATGTTGATAGGGGTCAACACAGCCTTGAAACTATAAGCCTTCTACTTGCTTTGAAGGTTGAGTATCCAAACAATGTTCATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCTCTTTTTGGTTTTCGAATTGAGTGCATTGAGAGGATGGGTGAGAGAGATGGAATTTGGACATGGCACCGGATAAACCGTCTGTTTAATTGGCTTCCTCTTGCAGCTctaattgagaaaaaaattatttgcatgCATGGGGGTATTGGTCGTTCAATAAACCACTTGGAACAAATTGAGAATATTCAGCGTCCTATTACAATGGAAGCAGGATCAATTGTGCTGATGGATCTATTGTGGTCTGATCCTACAGAGAATGACAGTGTAGAAGGGCTGCGACCAAATGCTAGAGGTCCAGGGTTAGTTACTTTTGGGCCTGATCGAGTCATGGAATTTTGCAATAACAATGATCTTCAGCTGATTGTTCGTGCACATGAATGTGTGATGGATGGCTTTGAGCGTTTTGCCCAGGGACATTTAATCACTCTTTTCTCAGCTACAAATTACTGCGGTACTGCAAATAATGCTGGGGCGATATTAGTTTTGGGGAGGGATCTTGTGGTGGTTCCTAAATTAATTCATCCAATACCACCTGCACTTTCTTCACCAGAAACGTCACCAGAACGACATATTGAAGATACTTGGATGCAGGAGTTGAATGCTAATAGACCACCAACACCAACTAGAGGTCGTCCTCCAGTAGCAAATGACCGTGGTTCGTTGGCTTGGATATAA 3018 0.4785 MDVDSSMVAENDQDSTVQNNEDRDKIGETTPSSLSPSSGGSPTEQQPQQQGAAAAAAAQVQHSPVVGPRLAPCYTVVDAILEKKEDGPGPRCGHTLTAVPAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPTSAGNAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVGVPGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSSRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRAGRYSADAAGGDASVELVRRCRHAAAAVGDLIFIYGGLRGGILLDDLLVAEDLAAAETTSAASHAAAAAAASDVQMGRVPGRYGFVDDRTGQTMSDTTADGSVVLGTPVAAPVNGDMYTDISPENALLQGSRRTSKGVEYLVEASAAEAEAISATLAAAKARQENGDVESPDRDRGAEATPSGKQISSMIKPEPGGPNSIVSGGVRLHHRAVVIAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKIIAHLLKPRGWKPPVRRQFFLDCNEIADLCESAERIFSSEPTVIKLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHLEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPIPPALSSPETSPERHIEDTWMQELNANRPPTPTRGRPPVANDRGSLAWI 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01278 1005 MobiDBLite consensus disorder prediction 547 583 - -
Tsu06g01278 1005 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1005 - -
Tsu06g01278 1005 Pfam Kelch motif 333 378 IPR011498 GO:0005515
Tsu06g01278 1005 Pfam Galactose oxidase, central domain 226 279 - -
Tsu06g01278 1005 Gene3D - 74 198 IPR015915 GO:0005515
Tsu06g01278 1005 SUPERFAMILY Kelch motif 146 435 IPR015915 GO:0005515
Tsu06g01278 1005 SMART pp2a_7 674 958 IPR006186 GO:0016787
Tsu06g01278 1005 ProSitePatterns Serine/threonine specific protein phosphatases signature. 771 776 IPR006186 GO:0016787
Tsu06g01278 1005 Pfam Calcineurin-like phosphoesterase 702 909 IPR004843 GO:0016787
Tsu06g01278 1005 PIRSF STPPP_BSU1 38 1005 IPR012391 GO:0004721|GO:0009742
Tsu06g01278 1005 Gene3D - 639 972 IPR029052 -
Tsu06g01278 1005 MobiDBLite consensus disorder prediction 1 60 - -
Tsu06g01278 1005 MobiDBLite consensus disorder prediction 29 56 - -
Tsu06g01278 1005 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 1005 - -
Tsu06g01278 1005 MobiDBLite consensus disorder prediction 550 564 - -
Tsu06g01278 1005 CDD MPP_Bsu1_C 654 956 IPR041758 -
Tsu06g01278 1005 PRINTS Serine/threonine phosphatase family signature 898 918 IPR006186 GO:0016787
Tsu06g01278 1005 PRINTS Serine/threonine phosphatase family signature 808 834 IPR006186 GO:0016787
Tsu06g01278 1005 PRINTS Serine/threonine phosphatase family signature 702 729 IPR006186 GO:0016787
Tsu06g01278 1005 PRINTS Serine/threonine phosphatase family signature 838 865 IPR006186 GO:0016787
Tsu06g01278 1005 PRINTS Serine/threonine phosphatase family signature 920 936 IPR006186 GO:0016787
Tsu06g01278 1005 PRINTS Serine/threonine phosphatase family signature 737 764 IPR006186 GO:0016787
Tsu06g01278 1005 PRINTS Serine/threonine phosphatase family signature 770 794 IPR006186 GO:0016787
Tsu06g01278 1005 Gene3D - 199 457 IPR015915 GO:0005515
Tsu06g01278 1005 MobiDBLite consensus disorder prediction 981 1005 - -
Tsu06g01278 1005 SUPERFAMILY Metallo-dependent phosphatases 657 964 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01278 Tsu-Chr6 12021718 12039023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01278 666 901 Calmodulin-binding Proteins AT5G63870 29.412 2.04e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01278 - - gmx:100816091 1711.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01278 06 12021718 12039023 Tsu06g01278 06 12021718 12039023 ECH
Tsu02g04773 02 56885375 56897341 Tsu06g01278 06 12021718 12039023 ECH
Tsu02g04773 02 56885375 56897341 Tsu06g01278 06 12021718 12039023 PCT