Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01271 atggattTGATGATTGGTAATGGTGATCTTTTTTCAAACATTGAACAAATTGATTCTGACAAAGCAAGTTGGAATGTAAAAGCCAAAATTATAAGACTATGGGAAGTTTCTGATTTCAATCGTAATAACAATCCTTTTTCTATTGAGATGGTGTTAATGGACATTGACGGTGGAAGAATTCATGCAACGATTAAGAAAACCCTCATTTACAAATTTAAGGATGATTTGGTTCAAGgaaaattttttagttttgaaaattTGGGTGTTTCTACAAATGGTGGTGCTTATCGCACTACTCACCATAGGTATAAGTTAAATTTTCAGTTTTCATCTGTAGTTCAGAGGCTTGCTGGCCATGATGTTGTCAAGTCTCCATTTAATTTAGTCCCTATTGCTGATGTTATTGGTGGTTCATATGACACTGATTATTTAGTCGaTGTCATTGGTGTTTTGACTGGGGTTGGATCTGAACGTGAAATAACAAACCAAAATGGAACAACCACTAAGCTTAATGTGATTGCTTTGGAAGCTGATGGGCACAAGATTCAGTGCACATTGTTTGGTCCTTATGTTGATGAACTTAACACTTTTATTGCTGCTGGTGACTATAACAATGTTGTAGTGATTGTCCAACTGGCAAAGGCTAAGACATTTCAAGACAAGATCCACATACAAAACTGCATGAATTGTACCCGGTTGTTCTTTAATCCAAACTGCCCTGAAAGTACAGTCTTGAGGGAAAGGTCTgatggtggtggtggaggagtCCCACCTCATATTGCAATGTTGGTGGATAAGACGTGGTTATTCAAGGTTGAGACGAAGCCTTCAAGTAATCCTAGGTTTGAGCAAACTTTTAGAGTTAGAAAAATATGCACTGATCATGCCATAATCAAGATATTCAAGGACAGATGGGACAGGGAGGATGCTTCTATTAGCAAACATATTAATgAGGCTGGATCTTTAAGTACTTTGTTGGATAAAGGAAAGGATGTTTTAGCAAGTGCTTCTACCAATATCTTATCAGAGGATTTAATTTCATTAACTGGAAGTAGTAGCAAAGCAAAAGGAAAAGAGATTGTTAGTGGTAGTACTGCTGTTGAAGTAAGTCTGgatttgttgaacaaattttCTGATACTGTTGTCAACCTTGCTGATGATTCTCTTGGTACTCAAGAGATAGAGGAAGATATTTATTCTAAGGTTTCACATTCATTGAAAGAAAAGGGCAAAGAGGTTGTTGTTGAGGGTACACCTGTTGGAAATATTGATCAAGTAATGAGAAAAGATGAAACTGAAGCTACTACTATTGCTGGTGAATCTGCCAAGATTGGTCTGTCTGTTATAACTCAAAATGAAACTGCTGCAATAATGAAAAAGGATATTTTGGAATTGTCTGGTGTTGTTGTTCTTGATAATGACTGTGTTCAAACTCAGCAAGATGATGTAACTCCAAATCAACTTGCTGCTAAGGAAACAAAAGGTTCTAGGAGCAAGAAGATAGTGAAGAGAGTCTCTCCTCAAAAGGAAGATGAGGATGAGAATGCACCAATCAAACTTTTGAAAAGGGCTATCAAAATTGAGAAGATTGTTTAG 1596 0.3528 MDLMIGNGDLFSNIEQIDSDKASWNVKAKIIRLWEVSDFNRNNNPFSIEMVLMDIDGGRIHATIKKTLIYKFKDDLVQGKFFSFENLGVSTNGGAYRTTHHRYKLNFQFSSVVQRLAGHDVVKSPFNLVPIADVIGGSYDTDYLVDVIGVLTGVGSEREITNQNGTTTKLNVIALEADGHKIQCTLFGPYVDELNTFIAAGDYNNVVVIVQLAKAKTFQDKIHIQNCMNCTRLFFNPNCPESTVLRERSDGGGGGVPPHIAMLVDKTWLFKVETKPSSNPRFEQTFRVRKICTDHAIIKIFKDRWDREDASISKHINEAGSLSTLLDKGKDVLASASTNILSEDLISLTGSSSKAKGKEIVSGSTAVEVSLDLLNKFSDTVVNLADDSLGTQEIEEDIYSKVSHSLKEKGKEVVVEGTPVGNIDQVMRKDETEATTIAGESAKIGLSVITQNETAAIMKKDILELSGVVVLDNDCVQTQQDDVTPNQLAAKETKGSRSKKIVKRVSPQKEDEDENAPIKLLKRAIKIEKIV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01271 531 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 247 - -
Tsu06g01271 531 SUPERFAMILY Nucleic acid-binding proteins 126 251 IPR012340 -
Tsu06g01271 531 CDD RPA1_DBD_B_like 146 241 - -
Tsu06g01271 531 PANTHER REPLICATION FACTOR A 1, RFA1 28 247 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu06g01271 531 SUPERFAMILY Nucleic acid-binding proteins 11 115 IPR012340 -
Tsu06g01271 531 CDD RPA1_DBD_A_like 26 113 - -
Tsu06g01271 531 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Tsu06g01271 531 Gene3D - 10 115 IPR012340 -
Tsu06g01271 531 Gene3D - 120 254 IPR012340 -
Tsu06g01271 531 MobiDBLite consensus disorder prediction 486 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01271 Tsu-Chr6 11939734 11943176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01271 14 253 Core DNA Replication Machinery Family AT2G06510 24.400 1.95e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01271 - - mtr:MTR_4g036240 326.635