Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01266 atgtcaatgGACATGATGGGAACTGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACAATTCTTGCGGTTAATGTTCCATACAGCAGTATGTTAACCATAGTGACAGTAAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGTGGCTACATCACTTCAACCCTTTTCTCCTCCTCAAATGCCTCAGCCACAGAAACAGCACATAATCGTTGAAGAACCAAGCAGCAAAGAAATGGGTTCATCATCAAAATGCAACAAAATAGCATCATTTGAGGCAATAGTTGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTATAACCGATTCATTAAGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGTCATAGGGAGGCTTTCAGTTCAGCAGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAACAAGCAAAATTGGACCATGGTGAAGGAACTCATGAAAAGACTAATGGATTctactaa 546 0.3901 MSMDMMGTERVCYVHCNFCNTILAVNVPYSSMLTIVTVRCGHCANLLSVNMVATSLQPFSPPQMPQPQKQHIIVEEPSSKEMGSSSKCNKIASFEAIVEHEQPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDHGEGTHEKTNGFY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01266 181 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 181 - -
Tsu06g01266 181 Pfam YABBY protein 8 161 IPR006780 GO:0007275
Tsu06g01266 181 SUPERFAMILY HMG-box 107 156 IPR036910 -
Tsu06g01266 181 Gene3D High mobility group box domain 112 166 IPR036910 -
Tsu06g01266 181 PANTHER PROTEIN YABBY 6-RELATED 1 181 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01266 Tsu-Chr6 11889695 11896979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01266 1 181 C2C2-YABBY Transcription Factor Family AT1G08465 57.672 9.49e-70 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Tsu06g01266 YABBY 1.1e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01266 K25796 - gmx:100500091 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04780 02 56963685 56970968 Tsu06g01266 06 11889695 11896979 PCT