Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01261 ATGAGTGATATAAGGAAGTGGTTCATGAAATCACATGAAAAAACCAACAATGCCGCCGGTAACTCCAACAAACCCTCCGATCAACCTAAACCCGACCCGGTGAAAACTGTGCCTGAAGTCCAAACAAGTTCGGGGAGAAGGAAAACTAGCAAATATTTTAATACAGATAAGCCAAAGGCAAAAGAAGAGGTAGAAACGCCGGCGCTCCCTGCTAAAAGAAAGACTATGAAGGAGAgtaatgaagatgatgaagatgactctgttCTGGCCTCTAATAAAAAGAAGTTGGCTGGTTTCACTcctacaaaaaaattgaagagtgGGTCGGGTAGAGGAATCCCCCAGAAACCTGTAGATTTGGATGAAAGTGATGAAGACGATCAGAAAGATGCTGTGTCTCCTATTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCATCAACACAAGCAACTGGTGGGAGAGGCCGAGGGGGGGGTGGTGGGGGTGGTAGGGGTGGATTCATGAATTTTGGTGAAAGAAAAGATCCTCCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTAGCTGGTTTAACCTTTGTAATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCTGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACAaatTATTTGTTATGTGATGATGATATTGGGGGAAGGAAGTCTGAAAAAGCAAAAGAGCTAGGAACTTCATTCCTCACAGAGGATGGATTGTTTGATATGATTCGGGCATCAAAACCTGCAAAAGCTCCCAAGCAAGAGGAATGCAAAAAACCTGTGAATAAGGCTGTTGCAGTGCCACTGCCATCCCCGTCAAAAGTTCCTCTGAAAGCAGAAACAAAGGCCTCTTTGCCTTCATGCTCACTTACCAACCAAGCCAAGCCTAAAAAAGCTACTACCGTTCAGTCTAATTTGACGTGGACAGAGAAACATCGACCTAAAAACGCAAAGGATATCATAGGGAATCAGTCACTTGTTTCACAGCTTCGAAATTGGTTGAAAGGTTGGCATGAGCAATTTTCTAACACTGGTGgcaataaaaaaggaaaaaagcaGAATGACCCTAATTCCAAAAAGGCTGTCTTGTTAAGCGGAACCCCTGGTATAGGCAAAACAACTTCAGCAAAGCTGGTGTGTGAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGTGGAAGCAATGCAAATACTATCAAGGAGCTTGTGAAAAATGAGACCATTGGTCCTAATATGGATAGGTCAAAGCAGTCCAAAAAAGTTCTTATTATGGATGAGGTTGACGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAACATCAAGATATCAAAAATTCCAATCATCTGCATTTGTAATGACCGTTATAGCCAGAAACTAAAAAGCCTAGTGAACTACTGTTTGCTTCTTAGTTACCGGAAGCCTACAAAGCAACAGATGGCAAAGAAGTTCATGGAGGTTGCAAAGGCTGAAGGGATTCAAGTTAATGAGATTGCTCTTGAGGAATTAGCAGAAAGAGTTAATGGAGATATGCGTATGGCACTAAACCAGTTACAATATATGGGCCTCTCCATGTCGGTGATCAACTACGACGATATTAGGCAGCGCTTACTCACCAATGCGAAAGATGAAGATATTTCACCATTCACGGCTGTTGATAAGCTTTTTGGTTTTAACGCTGGAAAGATGAGATGGGATGAGAGGATTAATCTTAGCATGAGTGATCCCGATCTTGTTCCTCTGATTATCCAGgaaaattatattaattatagaCCAAGCTCTGCTAGTAAGGATGACAATGGTATAAAACGCATGAACTTGATTGCCCGTGCTGCTGAGTCTATTGCCAGTGGGGATATAGTGAACGTGCAAATTCGCAGACATAGACAATGGCAGCTCTCTCAAACTAGTTCTGTTGCATCATGCATACTTCCTGCTTCATTGTTACATGGGCAAAGGGAAACACTTGAACcgGGAGAACGTAATTTTAATCGATTTGGTGGGTGGCTAGGAAAGAATTCGACAACGGGTAAAAACATGAGACTTATGGACGACCTGCATGTTCACGTTCTTGCATCTCGCGAATCTAGTTCGGGAAGGGATACTATTCGCTTGGAATACCTTTCTCTTATGcttaaaaaattgacagaacCTCTCCGAGTCCTGCCTAAGGCTGAAGCTGTTGAGAAAGTTGTGGAATTTATGAATACATATTCAATCAGTCAGGAAGATTTTGATACTATAGTAGAATTATCAAAATTCAAGGGTCATGCTAATCCGCTAGATGGCATACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCTGAGCAAAACTCGGACGGTTCGAGCTGCGGATCTAATTACTCTTCCTGGAATTAAAAAGGCACCTAAGAAGCGGGTTGCTGCTATTTTAGAACCAGCTGATGAAGGTGCGGAACAAGGTGATGGTGGCAATGCCTTGGACGAGAGTGAAGAAGAGAACACCTCTGACAAAGATGAGTCTGAAGGCGCCACAACTGGCGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAATTCAAAGGGCATGCAAGTACAATTGGAATTGAAGGGAACTGGAAGTTCCAAGAAGACATCTGGTGGTAGAGGTAAAGGTGCTTCCGCATCTGCGCAGAAGGTTGCCCAAACATCAAAGACTcctgcaaaaagaaaaaggtga 2832 0.4167 MSDIRKWFMKSHEKTNNAAGNSNKPSDQPKPDPVKTVPEVQTSSGRRKTSKYFNTDKPKAKEEVETPALPAKRKTMKESNEDDEDDSVLASNKKKLAGFTPTKKLKSGSGRGIPQKPVDLDESDEDDQKDAVSPIKSGGRGRGGRGASTQATGGRGRGGGGGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDDDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPKQEECKKPVNKAVAVPLPSPSKVPLKAETKASLPSCSLTNQAKPKKATTVQSNLTWTEKHRPKNAKDIIGNQSLVSQLRNWLKGWHEQFSNTGGNKKGKKQNDPNSKKAVLLSGTPGIGKTTSAKLVCEELGFQAIEVNASDSRGKADSKIEKGISGSNANTIKELVKNETIGPNMDRSKQSKKVLIMDEVDGMSAGDRGGVADLIANIKISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKKFMEVAKAEGIQVNEIALEELAERVNGDMRMALNQLQYMGLSMSVINYDDIRQRLLTNAKDEDISPFTAVDKLFGFNAGKMRWDERINLSMSDPDLVPLIIQENYINYRPSSASKDDNGIKRMNLIARAAESIASGDIVNVQIRRHRQWQLSQTSSVASCILPASLLHGQRETLEPGERNFNRFGGWLGKNSTTGKNMRLMDDLHVHVLASRESSSGRDTIRLEYLSLMLKKLTEPLRVLPKAEAVEKVVEFMNTYSISQEDFDTIVELSKFKGHANPLDGIQPAVKSALTKAYKELSKTRTVRAADLITLPGIKKAPKKRVAAILEPADEGAEQGDGGNALDESEEENTSDKDESEGATTGEKLKSELQSLNSKGMQVQLELKGTGSSKKTSGGRGKGASASAQKVAQTSKTPAKRKR 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01261 943 SUPERFAMILY post-AAA+ oligomerization domain-like 588 733 IPR008921 GO:0003677|GO:0006260
Tsu06g01261 943 SMART BRCT_7 190 268 IPR001357 -
Tsu06g01261 943 CDD BRCT_RFC1 188 266 - -
Tsu06g01261 943 MobiDBLite consensus disorder prediction 887 935 - -
Tsu06g01261 943 MobiDBLite consensus disorder prediction 852 943 - -
Tsu06g01261 943 MobiDBLite consensus disorder prediction 361 388 - -
Tsu06g01261 943 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 12 916 - -
Tsu06g01261 943 SUPERFAMILY BRCT domain 188 269 IPR036420 -
Tsu06g01261 943 Pfam BRCA1 C Terminus (BRCT) domain 190 265 IPR001357 -
Tsu06g01261 943 Pfam ATPase family associated with various cellular activities (AAA) 384 483 IPR003959 GO:0005524|GO:0016887
Tsu06g01261 943 PANTHER REPLICATION FACTOR C SUBUNIT 1 12 916 - -
Tsu06g01261 943 MobiDBLite consensus disorder prediction 1 189 - -
Tsu06g01261 943 MobiDBLite consensus disorder prediction 14 29 - -
Tsu06g01261 943 ProSiteProfiles BRCT domain profile. 188 269 IPR001357 -
Tsu06g01261 943 CDD AAA 379 510 - -
Tsu06g01261 943 MobiDBLite consensus disorder prediction 172 186 - -
Tsu06g01261 943 Gene3D BRCT domain 165 267 IPR036420 -
Tsu06g01261 943 Gene3D - 517 587 - -
Tsu06g01261 943 SMART AAA_5 380 518 IPR003593 -
Tsu06g01261 943 Pfam Replication factor RFC1 C terminal domain 657 819 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Tsu06g01261 943 PIRSF RFC1 1 920 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Tsu06g01261 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 577 IPR027417 -
Tsu06g01261 943 Gene3D - 328 516 IPR027417 -
Tsu06g01261 943 Gene3D - 589 698 - -
Tsu06g01261 943 MobiDBLite consensus disorder prediction 50 91 - -
Tsu06g01261 943 CDD HLD_clamp_RFC 517 575 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01261 1 900 Core DNA Replication Machinery Family AT5G22010 66.918 0.0 1102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01261 K10754 - gmx:100790070 1387.09