Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01257 ATGTTTAACGGTATGATGGATCCTGATTTGATTCGAATTGCTCAAGAACAGATGAGTCGTATGTCACCTGCTGATATGGCTCGGATCCAGCAACAGATGATGTCTAATCCTGAGTTGATGAGGATGGCTTCAGAAAGCATGAAGAATATGAATCCCGAAGATTTTAAACTTGCTGCTGAACAGTTAAAGCATACGCGGCCTGAAGAAATGGCTGAGATTGGTCAAAAGATGGCTAATGCATCGCCTGATGAAGTTGCGTCTATGCGTGCTCATGCCGAAGCTCAGATGAAATATCAATTGAATGCAGCTGAGATGTTGAAGAAGCAGGGAAATGATCTTCACAATCAAGGAAAGTTTGATGATGCTTTGCAGAAGTATAAGCTGGCTAAGGAAAACATTAAAGAGATTCCATCTTTTCAAAGTAGAAAGCTTCTTTTGGCGTGTTCACTTAACTTGATGTCCTGTTACTTGAAGACAAGgcagtatgatgagtgcataaAAGAAGGTTCTGAGGTTTTGGTATATGATTCAAAGAACCTTAAGGCTCTTTATCGAAGGGGTCAAGCATATAAGGAACTAGGCCGTCTGCAGGATGCTGTTACTGATTTGAGCAACGCACTTGAAGTGTCTCCTGATGATGGTACAATTGAGGAGCTTTTGCGGGACACCAAGGAACAGTTGACAAAGGAAGGTGGTGTTTTTGCACCTGGAAAATTAGTAATTGAAGAAATAACTGATGAAGTCGAGAATGTGCCTTCTGTAAACAACAGAAGCTCTTCTTTCGAACAAACAGTTGATCAACCACAAAAATCTGGTGATTCCTCTAAGAGTAGCAGTATAGCTAACAACggaaatccaaaatcaaaaccagatAGTTTAGATACACTGAGAAAAGATCCAGAAGCCATCAGATCATTCCAAAACATCATTTCAAATGCCGATCCTGCCACCCTGGCTGCTTTGAACATTGGACAATCCAAAGACGTGTCTCCAGATATGATTAAAGCATCCACAGAAATGATCGGAAAGATGTCACCTGAGGAACTTCAAAAAATGCTTGACATGGCGTCTTCATTTCAAGGGGAAAACCCATTTTTAAGAGGAGGTTCCTCTGATTCTCCATTCAACCCTGGGTCGATTCCTCCAAACTTGACACCTGATATGTTTAAAACAGCAAGTGACATGATAAGTAAAATGCCACCAGATGAACTTAAGAAGATGTTTGAAATGGCATCCGTATTGCAAGGGAAAGAATCTATTCCATCAGCAGCAGCTGTAGACAAGAATGAAAGAAATGTTTCACAGTCAGATTTCCCATCCTCAAGCACCACTCGTGCTTTTGGAGAATCAAGTTCTTCTCACAATGCATTTTCAAATATTAGCAATGCTTCAGAGCCAAACTTCCCCTCCTCAAGCACTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCAATGCGGCAGATGTTCACATCAATGTTTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGAGAACAATTTGGTTTCAAGCTTTCACCAGAGGAGGCAGCAAAAGCTCAGGAAGCTATGTCATCCTTATCACCAGAGAACTTGGATAAAATGATGCTTTGGGCGGACAGGATTCAAAGAGGAGCTGAATGTGCAAAAAAGACAAAGAACTGGTTGCTAGGGAAACAAGGCTTTATCTTAgcaatatgcatgctcattttGGCCATCATTCTTCACCGGTTAGGTTTCATTGGTAGCTAG 1761 0.3975 MFNGMMDPDLIRIAQEQMSRMSPADMARIQQQMMSNPELMRMASESMKNMNPEDFKLAAEQLKHTRPEEMAEIGQKMANASPDEVASMRAHAEAQMKYQLNAAEMLKKQGNDLHNQGKFDDALQKYKLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTRQYDECIKEGSEVLVYDSKNLKALYRRGQAYKELGRLQDAVTDLSNALEVSPDDGTIEELLRDTKEQLTKEGGVFAPGKLVIEEITDEVENVPSVNNRSSSFEQTVDQPQKSGDSSKSSSIANNGNPKSKPDSLDTLRKDPEAIRSFQNIISNADPATLAALNIGQSKDVSPDMIKASTEMIGKMSPEELQKMLDMASSFQGENPFLRGGSSDSPFNPGSIPPNLTPDMFKTASDMISKMPPDELKKMFEMASVLQGKESIPSAAAVDKNERNVSQSDFPSSSTTRAFGESSSSHNAFSNISNASEPNFPSSSTDLQEQMRNQMKDPAMRQMFTSMFKNMSPEMMANMGEQFGFKLSPEEAAKAQEAMSSLSPENLDKMMLWADRIQRGAECAKKTKNWLLGKQGFILAICMLILAIILHRLGFIGS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01257 586 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Tsu06g01257 586 MobiDBLite consensus disorder prediction 428 477 - -
Tsu06g01257 586 MobiDBLite consensus disorder prediction 251 295 - -
Tsu06g01257 586 Gene3D Tetratricopeptide repeat domain 89 233 IPR011990 GO:0005515
Tsu06g01257 586 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Tsu06g01257 586 PANTHER OUTER ENVELOPE PROTEIN 61 59 586 - -
Tsu06g01257 586 SMART tpr_5 146 179 IPR019734 GO:0005515
Tsu06g01257 586 SMART tpr_5 103 136 IPR019734 GO:0005515
Tsu06g01257 586 SMART tpr_5 180 213 IPR019734 GO:0005515
Tsu06g01257 586 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Tsu06g01257 586 MobiDBLite consensus disorder prediction 422 477 - -
Tsu06g01257 586 MobiDBLite consensus disorder prediction 251 290 - -
Tsu06g01257 586 SUPERFAMILY TPR-like 96 226 IPR011990 GO:0005515
Tsu06g01257 586 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 59 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01257 Tsu-Chr6 11802695 11810010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01257 99 227 Calmodulin-binding Proteins AT5G48570 34.815 5.27e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01257 - - cam:101514495 959.133