Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01248 ATGGCGCCGGAGGTAGCACGCGGTGAAGAACAAGGATGTCCTAGTAATATTTGGTCACTTGGTTGCAGTATGATTGAAATGTCAACTGGTTCTTCACCATGGCCTAATGGAGATGACCCTATTTCAGCAATTTATCATATAGCATACTCCAATTATGGTCCTAAAATTCCATATTTTTTATCTCATCAAGCAAAAgactttaaagaaaaatgtataaGGTGGAATCCAAAAGAGAGGTTTTCAGATAGTCAACTTTTGAGTCATGCATTTCTTGAAGAGTTATATTCCAATTCTAGGCAAGTTGTGGAATCTAATTCAATTTCACCAACCACTGTTCTTGAACAAGGCTTTTGGTGCGATTTGTGGTGGATCCATAGATCATAA 384 0.3646 MAPEVARGEEQGCPSNIWSLGCSMIEMSTGSSPWPNGDDPISAIYHIAYSNYGPKIPYFLSHQAKDFKEKCIRWNPKERFSDSQLLSHAFLEELYSNSRQVVESNSISPTTVLEQGFWCDLWWIHRS 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01248 127 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Tsu06g01248 127 SUPERFAMILY Protein kinase-like (PK-like) 1 108 IPR011009 -
Tsu06g01248 127 Pfam Protein kinase domain 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01248 127 Gene3D Transferase(Phosphotransferase) domain 1 1 115 - -
Tsu06g01248 127 ProSiteProfiles Protein kinase domain profile. 1 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01248 127 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 118 - -
Tsu06g01248 127 PANTHER MAP KINASE KINASE KINASE 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01248 Tsu-Chr6 11670561 11670944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01248 1 127 MAP Kinase Kinase Kinase AT5G55090 50.781 1.97e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Tsu06g01248 Pkinase 4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01248 K20716 - gmx:100794648 167.162