Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01247 ATGGAGTGGAAGAGAGGCCACATCATAGGACATGGCTCAACCGCCACAGTCTCCCTTGTCACGCTTAACGGCGACATATGTGCCGTGAAGTCATCGGAGCTTTCGTGTTCTGAGCCTCTAAAGAGAGAGCAAAACATTTTATCTTCTTTATGCTATCCCAATCCTTATGTGGTTGATTATAAAGGTTATGACATTACCATGGAGAATAACAAGCTCATGTACAATCTATTCATGGAGTATATGCCATTCGGCACGCTTAGTCAGCACGGTGGATTGCTCAATGAGCAAACAATCGTGTGCTATACAAGGCAAGTATTAAAAGGGTTAGATTATTTGCATTCAAAAGGGTTGGTGCATTGCGACATTAAAGGCGCCAACATCTTGATTGGAGAAGATGGAGCCAAAATTGGAGACCTTGGATGTGCTAAGAGTATAAATGAAGTTGTGGCGCCAATCCGCGGCACCCCTTTTTTTATGGCACCGGAGGTAGCACGCGGTGAAGAACAAGGATGTCCTAGTGATATTTGGTCGCTTGGTTGCACAATGATTGAAATGGCAACTGGTTCTTCACCATGGCCTAATGTAGATGACCCTATTTCAACACTTTATCATATAGCATATTCCAATTATGGTCCTAAGATTCCATGTTTTTTATCTCATCAAGCAAAGGACTTTATAGAAAAATGTTTAAGGAGGAATCCAAAAGAGAGATTTTCAGCTAGTCAACTTTTGAGTCATCCATTTCTTGAAGAGTTTTGTTCCAATTCTAAGCAAGTTGTGGAAGCTAATTCAATTTCACCAACTAGTATTCTTGAACAAGACTTTTGGTGTTCTATGGAAGAATCACAAAGCCATAGGTTAGATAATTCTATTGTTGATGATAGGATCAGAAGATTAGCAGGGGAACCATGTTTAGCAAGGTGGCATGATAATCATGATGATAATTGGATCACAATTAGAGAGAATGAAGTTGATGTTTTTAGTAATTGTGGGTTAGAGATAGGTTCAACTAATGATGAGTTGGTAAAAAGTAATGTGAAAGATGGAATAAGTGGGAATTTTTGTAAGGGTCAAATTCACATTTGTAGGGATGGTAGTTTTGTAGGTAGTAGTGATAATAATTTTCAGCTAGGTATTGGTAAGATGATAGTTCCATCATTATTAGAtgttttataa 1176 0.3852 MEWKRGHIIGHGSTATVSLVTLNGDICAVKSSELSCSEPLKREQNILSSLCYPNPYVVDYKGYDITMENNKLMYNLFMEYMPFGTLSQHGGLLNEQTIVCYTRQVLKGLDYLHSKGLVHCDIKGANILIGEDGAKIGDLGCAKSINEVVAPIRGTPFFMAPEVARGEEQGCPSDIWSLGCTMIEMATGSSPWPNVDDPISTLYHIAYSNYGPKIPCFLSHQAKDFIEKCLRRNPKERFSASQLLSHPFLEEFCSNSKQVVEANSISPTSILEQDFWCSMEESQSHRLDNSIVDDRIRRLAGEPCLARWHDNHDDNWITIRENEVDVFSNCGLEIGSTNDELVKSNVKDGISGNFCKGQIHICRDGSFVGSSDNNFQLGIGKMIVPSLLDVL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01247 391 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Tsu06g01247 391 Pfam Protein kinase domain 5 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01247 391 Gene3D Transferase(Phosphotransferase) domain 1 2 308 - -
Tsu06g01247 391 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 338 - -
Tsu06g01247 391 PANTHER MAP KINASE KINASE KINASE 1 338 - -
Tsu06g01247 391 SUPERFAMILY Protein kinase-like (PK-like) 3 267 IPR011009 -
Tsu06g01247 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Tsu06g01247 391 SMART serkin_6 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01247 391 CDD STKc_MAPKKK 2 249 - -
Tsu06g01247 391 ProSiteProfiles Protein kinase domain profile. 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01247 Tsu-Chr6 11666670 11667845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01247 3 320 MAP Kinase Kinase Kinase AT5G55090 48.837 2.19e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Tsu06g01247 Pkinase 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01247 K20716 - gmx:100794648 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01247 06 11666670 11667845 Tsu06g01247 06 11666670 11667845 ECH
Tsu06g01247 06 11666670 11667845 Tsu04g04818 04 55266306 55267368 ECH
Tsu02g04796 02 57161938 57163148 Tsu06g01247 06 11666670 11667845 PCT