Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01246 ATGGctagagagaaagaaattcCCATGGATTCTAATCCAATTGATAACAACAACTCTCTCAACCCATTTGTTCTTAACTCTTTCACTGAAGACATAAACAATCCCATGATGATGACACCTAGTCCTAAAAACAACATAGATAATGAAAACCAAACATCTCATGAAACATTGAAAGAGATTGATTTCTTTAAGGTTAACAACAATGATCATAATAAGGTTGTCAATCTCTCTGCCTTTGCCAATGATCATACCAATACACCATCTTTATTGGAACTCAAACTCAATAGTGGCACTGGTCTCAATCTTCTTACCCCCAATACTAGCAGTGATCAATCTATGTTGGATGATGATGGCATGTCTACTACTTCTGAGGAGAAGAGAATTAAGAATCAGATGGCTATTCTTCAAGGTGAGCTTGATCGAACAAACATGGAAAATCGTCGATTAAAGTTGATGCTTGATCAACTTCAAACAGATTACGATACCCTACGTATGCATTTCAATAAAGTGATGCATGACCGTATGGTTGAACGAAAGTctaaagagaaagagagaattaaGAATGGTGGAGTATTGGTTCCAAGTAAAGTTATCGATTTTGAGTCACCTCCTACTGTTGAGACTGAGATGGATCTTGATCCCTCCTCTTCATTAATGGGAAGAAAAAGAAGTCGCGATGAATTAGGACTGCCGACAAATAACACCGATGGTGCTTCCAATGAATTAGTCCTACAGAAGAAGAGTACTAATACTGTTGGTGATGAAAAGAAGGAACTTGGTAAAGAGATTGAAAGAGAGGTTATTCCCATTGATAATGATGAGAATACTCAAAGCTTGAGTCCTCCAAACAGTTATACTATTCATCAAGCTGAGGGTGCATTGGGGAAAGCAAGAGTTTCTGTTAGAGCTAGATCAGAAATAGACATGATCCCAGATGGGGGCCAATGGAGAAAGTATGGACAAAAAATGGCGAAAGGAAGCCCGTGTGCTCGATCTTATTATCGATGCAGCTTGTCTGCTGGCTGTCCGGTTAGAAAACAGGTACAAAGGTGTATTCAAGACACTACAATTGTAATCACAACATATGAAGGGTTTCACAACCATCCTTTAAGTCCAAAAGCCAAAGAAATGGCACAAAGAACTTCATCAGCTGCAAACATGCTTCTTATAGGATCAACATCAAGCAATGATGTAAGAACACCTTATTCAAGTTCCATCACAAGAACACCCTATTCAAGTTCTGCAGCTATCTCAATTTCTTCAACATTGCCGGTTGTTACACTTGACTATACTCAACCTTCAAATCAACTCTCAAAGCATCGAAATCAATTCCGAATTCTTGAAAACCCTCAGAATATTGCAAGTTCTTCAACTTCTAAAACTCCTCAGAGGCTTAACCAGGTAACtcaaaacataacaaaattttcTGGCCTTCATGTGTCATCAAAAAATGATGTAAACCCTTCTCATCAAATGGTAGTACCAAGCATTACTCAAGCAGTTAGTGCTGCCATTATTGCTGATCCAAATTTCACTGCTGCTTTGGCTGCTGCTATTACTTCCATTATGCGTTCTTCTCAATCGACCAGCAATGCtactactagtactactactacTGCTGCTGCCGATGGATCAGGAAACAACAATAATGGAAATATCACAAACCGCgacaataataatgaaaagCAGTAG 1692 0.3694 MAREKEIPMDSNPIDNNNSLNPFVLNSFTEDINNPMMMTPSPKNNIDNENQTSHETLKEIDFFKVNNNDHNKVVNLSAFANDHTNTPSLLELKLNSGTGLNLLTPNTSSDQSMLDDDGMSTTSEEKRIKNQMAILQGELDRTNMENRRLKLMLDQLQTDYDTLRMHFNKVMHDRMVERKSKEKERIKNGGVLVPSKVIDFESPPTVETEMDLDPSSSLMGRKRSRDELGLPTNNTDGASNELVLQKKSTNTVGDEKKELGKEIEREVIPIDNDENTQSLSPPNSYTIHQAEGALGKARVSVRARSEIDMIPDGGQWRKYGQKMAKGSPCARSYYRCSLSAGCPVRKQVQRCIQDTTIVITTYEGFHNHPLSPKAKEMAQRTSSAANMLLIGSTSSNDVRTPYSSSITRTPYSSSAAISISSTLPVVTLDYTQPSNQLSKHRNQFRILENPQNIASSSTSKTPQRLNQVTQNITKFSGLHVSSKNDVNPSHQMVVPSITQAVSAAIIADPNFTAALAAAITSIMRSSQSTSNATTSTTTTAAADGSGNNNNGNITNRDNNNEKQ 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01246 563 MobiDBLite consensus disorder prediction 524 557 - -
Tsu06g01246 563 SUPERFAMILY WRKY DNA-binding domain 303 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu06g01246 563 SMART WRKY_cls 310 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g01246 563 ProSiteProfiles WRKY domain profile. 305 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g01246 563 PANTHER OS05G0567200 PROTEIN 48 560 - -
Tsu06g01246 563 Coils Coil 125 159 - -
Tsu06g01246 563 Gene3D WRKY domain 295 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu06g01246 563 Pfam WRKY DNA -binding domain 312 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu06g01246 563 MobiDBLite consensus disorder prediction 205 240 - -
Tsu06g01246 563 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 48 560 IPR044810 GO:0003700
Tsu06g01246 563 MobiDBLite consensus disorder prediction 524 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01246 Tsu-Chr6 11656429 11660044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01246 98 550 WRKY Transcription Factor Family AT1G62300 39.917 6.33e-78 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu06g01246 WRKY 8.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01246 - - gmx:100795177 370.548