Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01240 ATGGAACTTCGTTCTCGTCGTCGCGTTTCCGATGATAACGATTCCGCGGATAGAAAGGGGAAGAAGCCGATGGTTGATGATACTGATGGAAAGTGTAACATCGATACCGATGAAGATGATCATGCCGTGTCTGTGAAatctgattctgattatgaagCTGAAGAAGTTAGGAATTTCCCTTTTGACTTGAATGAAGACCCAACTATAAGCATTAGTGATTATGATGGAGAAGATAATGCTTCTGATTCATCTGACGGTACTGAGTCTTTATCTAAACGGATAATGGCACAGTCCCGAAAGAGAGGAAGAAAATCAAAGATGGAAATTGGAGGTTTTGGTGATTTAGATGAATTAGCGAGAGCGTTGGAGGAGAATGAGTTACGTAGAATGGTTTTTGGTGAAGCTCCAGTTAATTTACCTAAGGCGAAAAAGAAGACAAaagcaaagaaaacaaaaaagggaGATAAGCCAGTGTTGTTATGGCATGCTTGGCAAGAAGAACATGAGAGATGGATTGATCAGAATTTGTTGGAAGACGTTAACTTGGATCAAAGTGAAGTGATGCATGAAACGGCCGAGGCATCGTCAGATCTGATTATTCCTTTGCTGAGGTACCAAAGGGAATGGTTAGCCTGGGCTTTGAAGCAGGAAAGTTCTGTAACTAGAGGAGGAATCCTTGCCGATGAAATGGGCATGGGGAAAACTATTCAAGCAATTGCCCTTGTCCTTGCTAAACGTGAATTACAACAAATGAGTTGTGAACGAGATGAACAATCACATGCGCCAGGGTCATCGAAAGTCCTTCCCGTGATCAAAGGAACACTTGTCATTTGTCCTGTGGTTGCTGTCAATCAGTGGGCTGCTGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAAGTTCTGATTTATCACGGGCCGAACAGAGGGAAGATTGCTGAACAGTTCTCGGAGTATGATTTTGTTATAACAACATATTCTATTGTTGAAACAGAGTACAGAAAGCATGTGATGCCTCCCAAGGAGAAGTGCCTATATTGTGGAAAGTTATATAACCCGAATAAGTTAGCTATTCACCAGAAGTACCATTGTGGGCCCAATGCTATTAAAACAGACAAACAATCAAAGCAaagcaagaaaaagaaaagtggtCAGAGTTCAAAGACGGATGGAGAATTGGAACATAATTCTACCAAGAAGAAGGAAGAGGAAATGCACCTCGGAGTAGAAGGCAATGAGAAGTCATTTTTGCATGCTGTAAAGTGGCAGAGGATCATATTGGACGAGGCACACTCTATAAAATCTAGGCATTGTAACACTACAAAAGCTGTTCTTGCTATAGAGTCTTCTTACAAATGGGCATTAAGTGGTACACCCCTTCAGAATCGTGTTGGAGAGCTATATTCTTTGGTACGATTTCTGCAGATAGTTCCTTTTTCCTATAACCTGTGCAAGGACTGTGATTGCAGGATACTTGATCATAGCTCCTCTAAAGAATGTCCAAACTGCTCCCACAGTTCAGTTAGGCATTTTTGCTGGTGGAACAAAAATATCGCGACACCAATTCAAACACATGGATATGGCAATAGTGGCAAAAGAGCTATGATATtgctcaaaaacaaaattttgaagaGCATAGTTTTAAGGCGAACTAAAATAGGCAGGGCTGCTGATCTTGCTCTTCCGCCTAGGATTGTTTCATTGAGGAGGGATAGTCTGGATATAAAAGAGCAAGACTATTACGAATCACTATACAATGAAAGTCAGGCACAGTTTAATACGTATGTCCAAGCAAATACTCTGACAAATAATTATGCTCATATTTTTGACCTCCTCACACGACTACGTCAGGCTGTGGATCATCCATATCTTGTGGTGTATTCTCCAACTGCCGCCGCACTTAAAGGTGAAAACTCGGCTAGTAATGGTGAACAAGAATGTGGCCTTTGTCACGATACTGTTGAAGATCCTGTGGTTACCTCTTGTCAGCATACTTTTTGCAAGGGATGCTTGATAGATTTCTCTGCTTCTTTGGGACGCGTATCGTGCCCCACATGCTCTACATTACTCACTGTTGATTTTACTTCTAACAATGATGCTGTGGTTAATAAAACAACAATCAAGGGTTTCAGATCTTCAAGCATTTTAAACAGAATTCAGATTGAGAATTTTCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATTTATGGTTGAAAGGGATGGTTCAGCAAAAGCAATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATAAACTACTCCTTGCAAAAGTCAGGTGTATCTTGCGTTCAATTGAATGGAACCATGTCAATGTCTGCTCGGGATGCTGCCATTAAGAAATTTACTGACGAGCCAGACTGCAAAATTTTTCTCATAAGCTTGAAAGCCGGAGGTGTTGCTCTGAATTTGACCGTCGCATCTCATGTTTTCCTCATGGATCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAGGACAGAATTCACCGGATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTCATCGAAAACACAATTGAGGAGAGGATCTTGAAACTACAAGAGAAGAAGGAACTAGTATTTGAAGGGACTATAGGCGGCTCTTCCGAGGCTCTAGGGAAGTTGACGGTGGCGGACTTAAAATTTCTCTTTGCTAACTAA 2700 0.4019 MELRSRRRVSDDNDSADRKGKKPMVDDTDGKCNIDTDEDDHAVSVKSDSDYEAEEVRNFPFDLNEDPTISISDYDGEDNASDSSDGTESLSKRIMAQSRKRGRKSKMEIGGFGDLDELARALEENELRRMVFGEAPVNLPKAKKKTKAKKTKKGDKPVLLWHAWQEEHERWIDQNLLEDVNLDQSEVMHETAEASSDLIIPLLRYQREWLAWALKQESSVTRGGILADEMGMGKTIQAIALVLAKRELQQMSCERDEQSHAPGSSKVLPVIKGTLVICPVVAVNQWAAEIDRFTLKGSTKVLIYHGPNRGKIAEQFSEYDFVITTYSIVETEYRKHVMPPKEKCLYCGKLYNPNKLAIHQKYHCGPNAIKTDKQSKQSKKKKSGQSSKTDGELEHNSTKKKEEEMHLGVEGNEKSFLHAVKWQRIILDEAHSIKSRHCNTTKAVLAIESSYKWALSGTPLQNRVGELYSLVRFLQIVPFSYNLCKDCDCRILDHSSSKECPNCSHSSVRHFCWWNKNIATPIQTHGYGNSGKRAMILLKNKILKSIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVQANTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAALKGENSASNGEQECGLCHDTVEDPVVTSCQHTFCKGCLIDFSASLGRVSCPTCSTLLTVDFTSNNDAVVNKTTIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLNGTMSMSARDAAIKKFTDEPDCKIFLISLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTVADLKFLFAN 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01240 899 CDD DEXDc_SHPRH-like 202 550 - -
Tsu06g01240 899 PANTHER - 413 735 - -
Tsu06g01240 899 PANTHER - 736 896 - -
Tsu06g01240 899 PANTHER - 137 389 - -
Tsu06g01240 899 Pfam Zinc finger, C3HC4 type (RING finger) 646 686 - -
Tsu06g01240 899 SMART ring_2 647 686 IPR001841 -
Tsu06g01240 899 Gene3D - 204 346 IPR038718 -
Tsu06g01240 899 MobiDBLite consensus disorder prediction 1 107 - -
Tsu06g01240 899 Coils Coil 716 736 - -
Tsu06g01240 899 ProSitePatterns Zinc finger RING-type signature. 662 671 IPR017907 -
Tsu06g01240 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 550 IPR027417 -
Tsu06g01240 899 Gene3D - 565 897 IPR027417 -
Tsu06g01240 899 ProSiteProfiles Zinc finger RING-type profile. 647 687 IPR001841 -
Tsu06g01240 899 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 736 896 - -
Tsu06g01240 899 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 137 389 - -
Tsu06g01240 899 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 413 735 - -
Tsu06g01240 899 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 477 IPR014001 -
Tsu06g01240 899 MobiDBLite consensus disorder prediction 369 406 - -
Tsu06g01240 899 Pfam SNF2-related domain 217 625 IPR000330 GO:0005524|GO:0140658
Tsu06g01240 899 MobiDBLite consensus disorder prediction 1 61 - -
Tsu06g01240 899 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 715 IPR013083 -
Tsu06g01240 899 CDD SF2_C_SNF 727 854 - -
Tsu06g01240 899 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 725 889 IPR001650 -
Tsu06g01240 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 898 IPR027417 -
Tsu06g01240 899 MobiDBLite consensus disorder prediction 383 406 - -
Tsu06g01240 899 SUPERFAMILY RING/U-box 642 691 - -
Tsu06g01240 899 SMART ultradead3 198 495 IPR014001 -
Tsu06g01240 899 SMART helicmild6 760 843 IPR001650 -
Tsu06g01240 899 Pfam Helicase conserved C-terminal domain 729 843 IPR001650 -
Tsu06g01240 899 Gene3D - 359 564 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01240 Tsu-Chr6 11589701 11597175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01240 135 897 RAD5 or RAD16-like Gene Family AT1G05120 66.366 0.0 1065
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu06g01240 SNF2_N 1.5e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01240 K15083 - gmx:100786366 1207.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01240 06 11589701 11597175 Tsu06g01240 06 11589701 11597175 ECH