LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu06g01234	ATGGGTGTAATTAAATCAGCCATAGGAGATGCAATTTTAACATcaatatttgttttcttaatcTCAACATTAAGACTTCTCTCTACAAAAACATCCTTATTTCTTAATCTTGAACCAATTTCACTACCTGGTAAATTCATCACAACAATCTTAAACACAATAATCATTCTCACAATAAGCCTTATTGGAAGAATCTTAGGTGGTGCTAGCTTCAATCCATCATCAACACTTTCCTTCTACACATTAGGACTAAGACCCAATTCATCTCTTCTATCATTTGCCATTAGATTTCCAGCTCAAGCAATAGGCGGCGCATTCGGTATCAAAACAATTCTTCAAGTTATGCCAAATGAGTACCAACATATGATGAAAGGTCCTTCTTTGAAAGTTGATTTACATACAGGTGCTATAGTTGAAGGTGTTTTAACATTTACTCATAACTTTGTTATTCTTATTGTTATGCTTAAGGGTCCTAAGAATCCTTGGTTAAAGGTTTATTTGCTTTCTGTTGCAACTTTGGTTTTGGTTATTATTGGTTCTAGTTATACAGGACCTTCTATGAACCCTGCTAATGCATTTGGTTGGGCTTATATGAATAATAAGCATAATACTTGGGagcaattttatgttttttggaTTTGTCCTTTAATCGGGGCTAGTTCTGCTGCTTTGGTTTATCGTTTTGTGTTTATGTCACCAATTAAggagaagaaagagaagaaagagaagaaagcTTGA	738	0.313	MGVIKSAIGDAILTSIFVFLISTLRLLSTKTSLFLNLEPISLPGKFITTILNTIIILTISLIGRILGGASFNPSSTLSFYTLGLRPNSSLLSFAIRFPAQAIGGAFGIKTILQVMPNEYQHMMKGPSLKVDLHTGAIVEGVLTFTHNFVILIVMLKGPKNPWLKVYLLSVATLVLVIIGSSYTGPSMNPANAFGWAYMNNKHNTWEQFYVFWICPLIGASSAALVYRFVFMSPIKEKKEKKEKKA	245

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu06g01234	245	PRINTS	Major intrinsic protein family signature	5	24	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tsu06g01234	245	PRINTS	Major intrinsic protein family signature	52	76	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tsu06g01234	245	PRINTS	Major intrinsic protein family signature	169	191	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tsu06g01234	245	PRINTS	Major intrinsic protein family signature	209	229	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tsu06g01234	245	Pfam	Major intrinsic protein	4	226	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tsu06g01234	245	Gene3D	Glycerol uptake facilitator protein.	2	244	IPR023271	-
	Tsu06g01234	245	SUPERFAMILY	Aquaporin-like	3	237	IPR023271	-
	Tsu06g01234	245	PANTHER	MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER	1	238	-	-
	Tsu06g01234	245	PANTHER	AQUAPORIN SIP1-1	1	238	IPR044222	GO:0015250

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu06g01234	Tsu-Chr6	11523629	11524640	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu06g01234	1	230	Major Intrinsic Protein MIP	AT3G04090	45.532	1.39e-61	192

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu06g01234	K09875		-	gmx:100797126	325.094