Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01212 ATGTTTCAGTCAAACTTGATGGAAGCTGGTCAATTTCATCCATTAGAGATGATGCAAAACACTTCAGAAAGTGATGTTCCTCGAATCCGTGAAGATGAATGTTTTGAAAGTGCCACAAAATCTGGCAGTGAAAATCATGAAGGTGGCGCTGCTTCTGGTGATGAACAAGAACCACGTCCCAAAAGAAAACGTTATCACCGCCACACTCAGCATCAGATCCAAGAAATGGAAGCttTCTTCAAGGAATGTCCACACCCAGATGACAAGCAAAGGAAGGAGCTAAGCAGAGAATTAGGGTTAGAGCCATTGCAAGTTAAGTTTTGGTTTCAAAACAAAAGAACTCAAATGAAGACACAACATGAACGTTCAGAAAACTCACAACTTAGAGCAGAAAATGAAAAGCTTAGAACAGATAACATGAGGTATAGAGAAGCTCTAAGCAATGCTTCATGTCCTAATTGTGGTGGTCCTACAGCTATAGGTGAAATGTCTTTTGATGAACATCATTTGAGGCTTGAAAATGGAAGGCTAAGAGAAGAGATCGATCGAATTTCAGCAATTGCAGCCAAGTACGTAGGAAAGCCGGTTGTAAACTATTCAAACATTTCAGCATCTCTCCCACCACGTCCAGAAATCGGTTTTGTTGGTAACCAACAAGGAATTGGTGGTATGGAAATGTATGGAACAAGTGGAGATATTCTAAGGTCAATCAGTGGACCTACTGAAGCAGATAAACCAATAATAATAGAATTAGCTGTTGCAGCTATGGAAGAACTCATTGGTATGGCACAAATGGGTGATCCACTTTGGTTAAGTACTACACTTGATGGAGCTGGTACTGTTCTTAATGAAGATGAATATGTTAGGACATTTCCTCGTGGAATTGGACCTAAACCTAATGGATTTAAGTGTGAAGCTTCTAGAGAAACTAGTGTTGTTATCATGAATCATGTCAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCAATGGTGTTTGCTGGTATTGTTTCAAGAGCTATGACTGTGGAAGTATTGTCAACTGGGGTGGCAGGAAACTACAATGGTGCTTTACAAGTGATGACAGCAGAGTTTCAAGTTCCATCACCATTTGTGCCAACAAGAGAGAGTTACTTTGTAAGGTATTGCAAACAACATACTGATGGGACATGGGCAGTTGTGGATGTTTCTTTGGATAATTTGCGCCCTAGTCCTTCCTCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAGATGCCAAATGGCTACTCCAAGGTGACATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCATGATCTATACAAGCAGCTTGTTAGCACTGGAAATGCATTTGGTGCAAAACGTTGGGTTGCAACATTAGATCGACAATGTGAAAGACTTGCTAGCTCCATGGCAACAAACATTCCTACTGTAGATGTTGGCGTGATAACAAACCAAGAAGGGAGGAAGAGTATGATGAAACTAGCAGAAAGAATGGTGATAAGTTTTTGTGGTGGAGTGAGTGCTTCAACAGCACATACATGGACAACACTATCAGGAACAGGATCTGATGATGTCAGAGTGATGACACGTAAGAGTGTTGATGATCCTGGAAGACCTCCTGGTATTGTTCTTAGTGCTGCTACTTCTTTTTGGCTTCCTGTTCCACCTAAACAAGTCTTTGATTTTCTTCGTGATGAAAACTCAAGAAATGAGTGGGATATTCTTTCCAATGGTGGAGTAGTCCAAGAAATGGCACACATTGCAAATGGAAGAGATACTGGAAATTGTGTGTCTCTCCTAAGAGTTAATAGTGCAAATTCAAGCCAGAGCAACATGTTAATATTACAAGAGAGTCTAACAGATTCAACAGGTTCATTTGTGATATATGCACCAGTAGACATTGTTGCTATGAATGTAGTTCTAAATGGAGGAGATCCAGATTATGTAGCACTTCTTCCATCCGGATTCGCTATCCTTCCTGATGGAAATGCAATTGGAAATGGTGAAAATGGAGGACAAGCCGGTGGCGGCAGCAGTGGTGGAGGATCACTATTGACTGTTGCATTTCAAATTTTGGTTGATTCTGTTCCAACTGCTAAACTTTCTCTTGGTTCTGTTGCAACTGTGCTTGAGTTCAGCTTCATgactaatttggattttgaGTTTACAAGGAGAAAATGGATTATGCATTTGctttga 2217 0.4032 MFQSNLMEAGQFHPLEMMQNTSESDVPRIREDECFESATKSGSENHEGGAASGDEQEPRPKRKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENSQLRAENEKLRTDNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENGRLREEIDRISAIAAKYVGKPVVNYSNISASLPPRPEIGFVGNQQGIGGMEMYGTSGDILRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLSTTLDGAGTVLNEDEYVRTFPRGIGPKPNGFKCEASRETSVVIMNHVNLVEILMDVNQWSMVFAGIVSRAMTVEVLSTGVAGNYNGALQVMTAEFQVPSPFVPTRESYFVRYCKQHTDGTWAVVDVSLDNLRPSPSSRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHDLYKQLVSTGNAFGAKRWVATLDRQCERLASSMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCGGVSASTAHTWTTLSGTGSDDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKQVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESLTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGNAIGNGENGGQAGGGSSGGGSLLTVAFQILVDSVPTAKLSLGSVATVLEFSFMTNLDFEFTRRKWIMHLL 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01212 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 717 IPR042160 -
Tsu06g01212 738 Gene3D - 285 464 IPR023393 -
Tsu06g01212 738 CDD homeodomain 61 120 IPR001356 GO:0003677
Tsu06g01212 738 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Tsu06g01212 738 Pfam START domain 251 471 IPR002913 GO:0008289
Tsu06g01212 738 MobiDBLite consensus disorder prediction 25 40 - -
Tsu06g01212 738 SUPERFAMILY Bet v1-like 490 714 - -
Tsu06g01212 738 MobiDBLite consensus disorder prediction 1 70 - -
Tsu06g01212 738 Coils Coil 118 145 - -
Tsu06g01212 738 SMART START_1 250 471 IPR002913 GO:0008289
Tsu06g01212 738 CDD START_ArGLABRA2_like 245 470 - -
Tsu06g01212 738 SMART HOX_1 60 123 IPR001356 GO:0003677
Tsu06g01212 738 Gene3D - 49 136 - -
Tsu06g01212 738 ProSiteProfiles START domain profile. 241 474 IPR002913 GO:0008289
Tsu06g01212 738 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Tsu06g01212 738 SUPERFAMILY Homeodomain-like 53 119 IPR009057 -
Tsu06g01212 738 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 15 717 - -
Tsu06g01212 738 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Tsu06g01212 738 SUPERFAMILY Bet v1-like 241 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01212 Tsu-Chr6 11287983 11293184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01212 1 715 Homeobox Transcription Factor Family AT1G05230 77.008 0.0 1111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu06g01212 START 3.3e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01212 K09338 - gmx:100790101 1219.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04820 02 57393157 57400713 Tsu06g01212 06 11287983 11293184 PCT