Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01176 ATGTTAGTGAAAAGCCAAAACAAAGGGGATGGACCCAAGTCCCTTGCCGATACATTGGCAAAATGGAAAGAATACAATGCGCGACTTGAATCGAGCGGGGAAGCTGCGAAGCCAGTTAGGAAAGTTCCCGCCAAGGGATCGAAAAAAGGGTGTATGAAAGGTAAAGGAGGACCCGAGAATTCGCGTTGTAATTTCAGAGGTGTTAGGCAAAGGACTTGGGGAAAATGGGTGGCTGAAATTAGGGAGCCAAACAGAGGAAACAGGCTCTGGTTAGGTACATTTCCAAATGCAGTCGGCGCTGCTCTTGCTTATGACGAAGCAGCGAGGGCAATGTACGGTGCTTGCGCGCGCCTGAACTTTCCTAATGTAGAAGTATCCAATTTCTCTCAGTTGGAATCTTTGAAAGATTCTCCAAATGCAGATCAATCTGGTTTTGTAAAGACAGCATCGGAGAATCCTGAGTCCATGATATCGCCAGATAACATTTGTGTCGATGCTGCTGAGGATGTTGACATGAAACATCTTTCCTTATCCTTAAGTGTGACTGTGAATCACGAGGAAAAAGAGGGTGATTCGATGACTAGTTGA 588 0.4575 MLVKSQNKGDGPKSLADTLAKWKEYNARLESSGEAAKPVRKVPAKGSKKGCMKGKGGPENSRCNFRGVRQRTWGKWVAEIREPNRGNRLWLGTFPNAVGAALAYDEAARAMYGACARLNFPNVEVSNFSQLESLKDSPNADQSGFVKTASENPESMISPDNICVDAAEDVDMKHLSLSLSVTVNHEEKEGDSMTS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01176 195 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 183 - -
Tsu06g01176 195 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Tsu06g01176 195 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Tsu06g01176 195 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Tsu06g01176 195 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 183 - -
Tsu06g01176 195 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Tsu06g01176 195 MobiDBLite consensus disorder prediction 30 63 - -
Tsu06g01176 195 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Tsu06g01176 195 MobiDBLite consensus disorder prediction 134 159 - -
Tsu06g01176 195 MobiDBLite consensus disorder prediction 134 157 - -
Tsu06g01176 195 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Tsu06g01176 195 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Tsu06g01176 195 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01176 Tsu-Chr6 10800019 10800606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01176 2 134 AP2-EREBP Transcription Factor Family AT2G40350 54.745 1.04e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g01176 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01176 - - gmx:100499747 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04861 02 57782723 57785100 Tsu06g01176 06 10800019 10800606 PCT