Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01168 ATGTTGTCTATTTTCTATTTCTGCTTATTATTTGTCACTTCTTTTAAGCATTGTTTAGCTAGAGATACCATAACCATAAACAACTTACTAAGAGATGGAGAAAAACATACTCTCATTTCAGCAGGAGAAAATTTTGAACTTGGATTTTTCACTCTAAATGAAACCTCTTTTGGTGTTAGAAAAAGATATGTTGGAATTTGGTACTACAATTTGACACCAAAAACAGTTGTTTGGGTTGCAAATAGAGACAACCCAGTTCAAGATTCTAGTGGCACTTTTGTCATTTCACAAAATGGAAATCTCATAGTTTTGGACAGTACTGGTAAATCTTACTGGAGTACAAATCTTGaaacatcttcatcttcattacATAGGAAAGTGAAACTATTAGACAACGGAAATCTTATCGTAATCGACgaagaacaagaacaaggaCAAGGTAAAGTGAAGATTCTTTGGCAGAGTTTTGAGAATCCAACAGATACATTTCTACCAGGAatgaaaatggatgaaagttTATCATTAACTTCATGGAGAAGTAATGAAGAACCTGCATCAGGAAACTTTACGTTCGAACAAGACGAAAAAGAGAATCAATATATTATATGGAAAAGATCCATTAGGTATTGGAAAAGTAGTGTATCAGGTAAATTTGTTGGAACTGGTGAAATGTCTTCAGCTATATCTTACCTTTTGTCAAATTTCACTTTGAAAATTTCACCAAACAACACTGTTCCTTTTCTTACTTCATCACTTTATATCAACACAAGATTTGTTATGACTTATTGGGGTCAACTTCAGTATTTGAAGATGGATTCAGAGAAAAAATGGTTGATGGTTTGGGTTGAACCAAGAGATAGATGCAGTGTGTTCAATGCTTGTGGAAATTTTGGTAGCTGTAATAGTAAATATGAATCTATGTGTAAGTGTTTACCTGGATTTAAGGCGAATTCGATCGAAAGTTGGAAAGGTGGAGATTTTTCAGGTGGGTGTAGTAGGAAAACAAATGTGTGTGGTGAGAATGCTAAGAGCGATACATTTTTGAAGTTAAGAATGATGAAAGTTGCGAATCCTGATGCCGAGTTTAATGCTAAGAGTGAAGAGGAATGTAAGATGGAGTGTGTTAATAATTGTCAGTGTTATGCATATTCATATGAAGATGTTGAAAAGGTTGCAAGGATTGGTGATAGTGGTGATCCTGTTTGTTGGATTTGGTATCAGGATTTGGATAATCTTGAAGAAGAATATGAGGGTGGATGTGATCTGAATGTTAGAGTTGCATTTTCTGATATAGAATCCACTAGCAGAAGTTGTGGAACTTGTGGCACAAACTTCATTCCATATCCCCTTAGCACAGGACAACATTGTGGTGACCCTAAGTACTTCAATTTTCATTGCAATACTACAAATGGTGAGCTTAAATTTGATACTCCAGCAGGAACTTATCAagtcataaatataaatcaagAAACTCAAAAATTCTTGATCCATCAAAAGAATGTACTTAATTGTAAGAGTCAAAGTTCTCTACTTCTCAATAAGTCATCTCCATTTCATATTACTGGAAATTGCTATGTTGATCCAATCACATTTAGTTCTAATGCTCCACTACAACATGGAGTTGAAATAGAGTTAAGTTGGGATTCTCCACTAGAGACAATTTGTTCTTCATTGTTGGATTGCAAAGACTGGCCAAACTCAACTTGCAATACTACCAATGATGGAAGGAAGAGATGTCTTTGCAATAAAAACTTTCTTTGGGATGGCTTCAAACTAAATTGTACTCGAGAAGGCGAAAGCTACAAAACAAAACGGCATCTGTCTTCAGCCGTGATCATTGTACTGATATTAACACCTGTGGTTCTCTTAATTATTCTGTCAAGTATAGTCGCATGTACTTATGTGCGAAAAAGAAGACAGTCCAAGACACAAGAAACCAAAGGACATGCTCAAAAATACTCAGGTATGAACTTGTATGACGGTGAGAGATATGTTAGGGACTTAATTGAATCTGGTAGAATGAAAGAAGACGATGCACAAGCCGTAGATATTCCGCATTTTCATCTTGAGAATATACTTGATGCTACTAATAACTTTGCAAGTGCAAACAAGCTTGGACAAGGTGGTTTTGGTCCTGTCTACAAGGGGAAATTTCAAGGAGGACAAGAAATAGCGGTAAAAAGACTTTCAAGTTGTTCTGGACAAGGTTTCGAGGAGTTTAAGAATGAAGTTGTGTTGATAGCCAAGCTTCAACATCGAAACCTAGTTCGACTTCTAGGTTACTGTGTTGAAGGAGATGAAAAGATGTTAGTATATGAATATATGCCAAATAGAAGCTTGGATGGTTTCATTTTTGACAAAAAGTTGAGTGTTTTATTAATCTGGGATACACGATTCAAGATTATTTTGGGTATTGCTCGAGGTCTTCTTTATTTGCACGAAGATTCTAGGCTGAGGATTATTCATAGAGATTTGAAAGCAAGCAATATTCTACTAGATGCAGAGAAGAATCCTAAAATTTCGGACTTTGGCTTAGCTAGGATATTTGGAGGAAAAGATACGGTAGCGAACACAGAAAGAGTGGTTGGAACATATGGTTACATGTCTCCAGAGTATGCACTTGATGGACATTTTTCAGTGAAGTCTGATGTTTTTAGTTTTGGTGTTGTGGTACTTGAGATTATTAGTGGAAAAAGGAACACTGGATTTTATCAAGTAGAACATGAATTAAGCCTTCTTGGATATGCATGGCATTTATGGAAAGTAGGGAGGGCATTGGATTTCATGGACCAAACACTATGTGAAACATGCAAAGCAGAAGAATGTTTGAAATGTATGAATATAGGATTACTATGCTTACAAGAAGACCCAAATGAACGTCCAAACATGTCAAATGTTGTTTTTATGTTGGGAAGTGAATCAAATACTCTTCCAACTCCTAAGGAACCAGCCTTTGTTATTAGAAGATGTCCTTCAAGCAGAGCATCTACATCTAGTAAAATGGAAACTTTTTCACGTAATGAATTGACTGTCACTTTGGAAAATGGAAGGTAG 3054 0.35 MLSIFYFCLLFVTSFKHCLARDTITINNLLRDGEKHTLISAGENFELGFFTLNETSFGVRKRYVGIWYYNLTPKTVVWVANRDNPVQDSSGTFVISQNGNLIVLDSTGKSYWSTNLETSSSSLHRKVKLLDNGNLIVIDEEQEQGQGKVKILWQSFENPTDTFLPGMKMDESLSLTSWRSNEEPASGNFTFEQDEKENQYIIWKRSIRYWKSSVSGKFVGTGEMSSAISYLLSNFTLKISPNNTVPFLTSSLYINTRFVMTYWGQLQYLKMDSEKKWLMVWVEPRDRCSVFNACGNFGSCNSKYESMCKCLPGFKANSIESWKGGDFSGGCSRKTNVCGENAKSDTFLKLRMMKVANPDAEFNAKSEEECKMECVNNCQCYAYSYEDVEKVARIGDSGDPVCWIWYQDLDNLEEEYEGGCDLNVRVAFSDIESTSRSCGTCGTNFIPYPLSTGQHCGDPKYFNFHCNTTNGELKFDTPAGTYQVININQETQKFLIHQKNVLNCKSQSSLLLNKSSPFHITGNCYVDPITFSSNAPLQHGVEIELSWDSPLETICSSLLDCKDWPNSTCNTTNDGRKRCLCNKNFLWDGFKLNCTREGESYKTKRHLSSAVIIVLILTPVVLLIILSSIVACTYVRKRRQSKTQETKGHAQKYSGMNLYDGERYVRDLIESGRMKEDDAQAVDIPHFHLENILDATNNFASANKLGQGGFGPVYKGKFQGGQEIAVKRLSSCSGQGFEEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKMLVYEYMPNRSLDGFIFDKKLSVLLIWDTRFKIILGIARGLLYLHEDSRLRIIHRDLKASNILLDAEKNPKISDFGLARIFGGKDTVANTERVVGTYGYMSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQVEHELSLLGYAWHLWKVGRALDFMDQTLCETCKAEECLKCMNIGLLCLQEDPNERPNMSNVVFMLGSESNTLPTPKEPAFVIRRCPSSRASTSSKMETFSRNELTVTLENGR 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01168 1017 CDD B_lectin 27 159 IPR001480 -
Tsu06g01168 1017 Gene3D - 17 157 IPR036426 -
Tsu06g01168 1017 SMART blect_4 27 159 IPR001480 -
Tsu06g01168 1017 CDD STKc_IRAK 705 970 - -
Tsu06g01168 1017 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 17 1014 - -
Tsu06g01168 1017 Pfam Protein tyrosine and serine/threonine kinase 702 968 IPR001245 GO:0004672|GO:0006468
Tsu06g01168 1017 SMART ntp_6 342 426 IPR003609 -
Tsu06g01168 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Tsu06g01168 1017 Gene3D Phosphorylase Kinase; domain 1 664 774 - -
Tsu06g01168 1017 ProSiteProfiles Bulb-type lectin domain profile. 21 150 IPR001480 -
Tsu06g01168 1017 ProSiteProfiles Protein kinase domain profile. 699 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01168 1017 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Tsu06g01168 1017 CDD PAN_AP_plant 338 427 - -
Tsu06g01168 1017 ProSiteProfiles PAN/Apple domain profile. 338 420 IPR003609 -
Tsu06g01168 1017 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 181 IPR036426 -
Tsu06g01168 1017 SUPERFAMILY Protein kinase-like (PK-like) 682 970 IPR011009 -
Tsu06g01168 1017 Pfam D-mannose binding lectin 75 171 IPR001480 -
Tsu06g01168 1017 SMART serkin_6 699 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01168 1017 Pfam S-locus glycoprotein domain 215 317 IPR000858 GO:0048544
Tsu06g01168 1017 Gene3D Transferase(Phosphotransferase) domain 1 775 980 - -
Tsu06g01168 1017 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 1014 - -
Tsu06g01168 1017 Pfam PAN-like domain 341 411 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01168 Tsu-Chr6 10733258 10738173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01168 692 988 Receptor kinase-like Gene Family AT4G23230 61.279 2.68e-124 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu06g01168 PK_Tyr_Ser-Thr 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01168 - - gmx:100775297 1651.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01168 06 10733258 10738173 Tsu06g01168 06 10733258 10738173 ECH