Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01166 ATGTCCAGTAACATGAGAACTGTTTAtctcttcttcaacctctaTATTTCTTGGTTGCTAATATACTCTTCTTCACCGTGTTTAGCAGGAGATACTTTTTATGATAGATTAGCAAGAGATACTTTGAAGGCAAGCCAGAAGATATCAAGCAATGAATATGATACCTTTCTTGTTTCAGCTGGAAAAATATTTGAACTAGGCTTCTTTACTCCAAACGTTACTGGCGATTCATTAAGATACTTAGGCATATGGTATTACATACAAGACAGGTCAGAACAACCTCAAAAACAAACAGTTGTGTGGGTTGCAAACAGAGACAAACCTATTGCTGTTAATTCAACTGGTGTTTTCCAAATAGCAGAAGATGGAAATCTTGTGGTTGTAGACACATCTCCTAATAGTATAACATACTGGTCATCCAATTCCACAGTGAAACACTCTTCTAATTCTTCACCTATAAACATGACATTGAAACTCATGGATTCTGGTAACCTTGTGTTATTAGGTGATGATAGGAATTTGACACTCTGGGAGAGCTTTGAAAATCCATCTGACACATTCCTACCAGGTATGAAGATGGATACCAATTTGAAATTGACCAGTTGGAAAAGTGTTGATGACCCAGGAAGTGGGAATTTCAGTTTTAAGATGGCGGAGGACAACCGTTTCATCATCTTAAACCGAAGCGAAATATTTTGGGAGAGCGAAGAGTACGGAAGGTTGATTCTCGATCCAAATTTTGATCAATTTCATGATATCAGCTCAGATGTTATCAATTTGTTGACCAACTTCAGTTTACTCAACAGGAGCAAAGTAGTTCCTACGAATCGCTACAACAACACAAGGTTGTTTCTTGATTCTACAGGTGTGATACAGTGGGAGTATCAATCAGGTGAAGGTGATTTGTTTGTTAGGTGGAAGCAGCCAAAAACCAATTGTTCAATATATAATGTTTGCGGAGACTTTGCTAGCTGTAACGACGATGATTATGAGTTATGCAAATGTTTACCTGGATTCGACAAGGGAAAAGGAGATTCTTCTCTACAAGACAACAAGGTAGGTTGTATAAGGAGAACATCATTGTCACGTGCTCGAAGTGACACCCCGCCGGCATTCTTGAACTTGACAATGATAAAAACAGGAAGGCCTGATGTAAAGGTTATGGCAGACGGTGAAGAAAATTGCAAATCTACGTGCCTTGAGAAGTATCCACTGTGCCAGGCTTACTCATATGCTCCCCTTACTCAGCGTACTCTTAATCCTTCAACATGTTGGATCTGGACACACAATTTAACTACTCTTAAAGAAGACTACACTGATGGAGATGATGATCGTAGACTCTTTGCCCTAGTTGATAATTCAGACATAAAACCAACTCCAAGAACTTGTGAGCCTTGTGGTACAAACATAGTCCCTTATCCGCTTAGTACTGGATCCAACTGTGGAGACCTCACATACTTCAAATTTAGTTGCAACAGCTCAACAGGTCAACTTAGCTTCAACACCACCGACAACGTTAGTTACAGAGTTATTCGTGTAGTGCCAAATTCAAGAACGTTTACCATTAAGGTTAATTCTTTAAATCAATATTGTGATGAAGGATCGGACAACACAGGAAATCTGAAGGTTTCTTCACCCTATAGCATTATCGGTAACAATTTTTGTTCTGAACATGTGGACATTAGTTGGGAACCACCTTCAGAAACTGGATCTTCTCCCAGAGGGAAATCTAAAAGCTCGTTCTATTTGATTCTTGGTTTAACTCTTACTGGTGTGATTGTTCTAGCATGCATCATTATTTTCGGTTATGCATGCAGGCGAAGAATAGCTCATATGTTTAAGCAAGATAAGGAAAACATACAAAGGAATGTTAGAGGGCAATTTTACGACAGTGAAAGACATGTGAAGAACTTGATAGACATGGAGGGAATGGAAGAGAATGACAATGATGGAATAGAGGTTCCTTATTTCGATTTCGAGAGCATACTAATCGCCACAGATGACTTTTCAGATGCAAATAAACTTGGAAAAGGCGGTTTTGGGCCTGTTTATAAGggtaaGCTTGGTGGTCAAGAAATTGCCGTAAAGAGACTTTCAAGTGTTTCATCACAAGGCTTACAGGAATTCAAGAATGAGGTTGTTTTGATTGCTAAACTTCAACATCGAAACCTTGTTAAATTACGGGGCTACTGCATAAAAGGGGAggaaaaaattctaatttatgAATATTTGCCTAACAAGAGTTTGGACTTATTGATATTCGatCCGATAAAAAGCGTAATTTTGGATTGGCAAATGCGGTTTGATATCATTCTCGGAATTGCTCGTGGGCTACTCTATCTTCATCAAGATTCAAGACTTAGAGTTATTCACCGAGATTTGAAAACTAGCAACATTCTTTTAGACGAGGAGATGCAACCAAAAATCTCAGATTTTGGACTAGCAAGAATATTTGGAGGTAAAGAAGTAGAGGCAAGCACAGAGAGGATTGTCGGTACATACGGATACATGTCTCCCGAATATGCGTTGGATGGATATTTCTCAACAAAGTCAGATGTGTTCAGTTTCGGCGTTGTCGTGCTTGAAATCATCAGTGGAAAAAGAAAAACCGGATTCTTCCGATCTAAAGAAATTTCAAGCCTTTTGGgttatGCTTGGAGACTATGGAGAGAGGACAAATTGCAAGATTTAATGGACTCATCTCTATGTGATTCATACAATGCTAACCAATTTATTAGGTGTGCACAAATTGGACTCCTATGTGTGCAAGATGAACCTGATGATCGTCCACACATGTCAAATGTGGTGACTATGTTAGACAATGAAACTAAGACCCTTGTAACACCTAAACAACCAACCTTTTTTTCACGTAAAGAGATATCTAGTACAGCTTCTTCAGGTATACAGATTGAGAGTAGCATTCAAGAAGGTCGATAG 2937 0.3827 MSSNMRTVYLFFNLYISWLLIYSSSPCLAGDTFYDRLARDTLKASQKISSNEYDTFLVSAGKIFELGFFTPNVTGDSLRYLGIWYYIQDRSEQPQKQTVVWVANRDKPIAVNSTGVFQIAEDGNLVVVDTSPNSITYWSSNSTVKHSSNSSPINMTLKLMDSGNLVLLGDDRNLTLWESFENPSDTFLPGMKMDTNLKLTSWKSVDDPGSGNFSFKMAEDNRFIILNRSEIFWESEEYGRLILDPNFDQFHDISSDVINLLTNFSLLNRSKVVPTNRYNNTRLFLDSTGVIQWEYQSGEGDLFVRWKQPKTNCSIYNVCGDFASCNDDDYELCKCLPGFDKGKGDSSLQDNKVGCIRRTSLSRARSDTPPAFLNLTMIKTGRPDVKVMADGEENCKSTCLEKYPLCQAYSYAPLTQRTLNPSTCWIWTHNLTTLKEDYTDGDDDRRLFALVDNSDIKPTPRTCEPCGTNIVPYPLSTGSNCGDLTYFKFSCNSSTGQLSFNTTDNVSYRVIRVVPNSRTFTIKVNSLNQYCDEGSDNTGNLKVSSPYSIIGNNFCSEHVDISWEPPSETGSSPRGKSKSSFYLILGLTLTGVIVLACIIIFGYACRRRIAHMFKQDKENIQRNVRGQFYDSERHVKNLIDMEGMEENDNDGIEVPYFDFESILIATDDFSDANKLGKGGFGPVYKGKLGGQEIAVKRLSSVSSQGLQEFKNEVVLIAKLQHRNLVKLRGYCIKGEEKILIYEYLPNKSLDLLIFDPIKSVILDWQMRFDIILGIARGLLYLHQDSRLRVIHRDLKTSNILLDEEMQPKISDFGLARIFGGKEVEASTERIVGTYGYMSPEYALDGYFSTKSDVFSFGVVVLEIISGKRKTGFFRSKEISSLLGYAWRLWREDKLQDLMDSSLCDSYNANQFIRCAQIGLLCVQDEPDDRPHMSNVVTMLDNETKTLVTPKQPTFFSRKEISSTASSGIQIESSIQEGR 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01166 978 SUPERFAMILY alpha-D-mannose-specific plant lectins 99 207 IPR036426 -
Tsu06g01166 978 ProSiteProfiles Bulb-type lectin domain profile. 39 180 IPR001480 -
Tsu06g01166 978 Gene3D Transferase(Phosphotransferase) domain 1 744 954 - -
Tsu06g01166 978 Gene3D - 33 181 IPR036426 -
Tsu06g01166 978 CDD B_lectin 45 183 IPR001480 -
Tsu06g01166 978 CDD STKc_IRAK 675 941 - -
Tsu06g01166 978 Pfam Protein tyrosine and serine/threonine kinase 673 938 IPR001245 GO:0004672|GO:0006468
Tsu06g01166 978 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 33 471 - -
Tsu06g01166 978 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 555 968 - -
Tsu06g01166 978 SUPERFAMILY Protein kinase-like (PK-like) 652 959 IPR011009 -
Tsu06g01166 978 Gene3D Phosphorylase Kinase; domain 1 632 743 - -
Tsu06g01166 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Tsu06g01166 978 Pfam PAN-like domain 371 432 IPR003609 -
Tsu06g01166 978 Pfam D-mannose binding lectin 98 198 IPR001480 -
Tsu06g01166 978 SMART serkin_6 669 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01166 978 Pfam S-locus glycoprotein domain 275 341 IPR000858 GO:0048544
Tsu06g01166 978 ProSiteProfiles Protein kinase domain profile. 669 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01166 978 SMART blect_4 45 183 IPR001480 -
Tsu06g01166 978 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 33 471 - -
Tsu06g01166 978 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 555 968 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01166 Tsu-Chr6 10708366 10713830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01166 572 957 Receptor kinase-like Gene Family AT4G05200 49.239 2.23e-119 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu06g01166 PK_Tyr_Ser-Thr 4.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01166 - - mtr:MTR_0148s0080 1317.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04867 02 57806528 57810492 Tsu06g01166 06 10708366 10713830 PCT