Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01163 ATGTCCAGTAACATGGgaactatttatctcttcttcaacctctaTACTTCATGGCTGCTAATATGCTCTTCTCAGCTGTGTTTAGCAGGAGACACTTTGAGCATTGGAGAGAAGGTAATAGGCAGTGATACCAACCTTGTTTCAACTGGAAAAATGTTTGAACTTGGCTTCTTTGCTCCAAGCATCACTGATAGTTCAAAAAGATACTTGGGTATATGGTATCACATACCAGAGGGGTCAGAAGAATCAGAACAACCTCAAAATCTAACAGTTGTATGGGTTGCAAACCGAGACAAGCCTATAGCTTTTGATTCATCTGGAGTTTTCCAAATCGCGAAGGATGGAAATCTTGTGGTTGTAGATACATCTGTTATTCAAAACAAGTACTGGTCAACAAATTTGAAAGTGAAAGAGTCTTCTAAAAATAGGACAGTGAAACTGATGGATTCTGGTAACCTTGTGTTACTAGATGATAGGAATTCGGAACTCTGGCAGAGTTTCGAAAATCCAACTGACACATTCCTACCTGGAATGAAGATGGATATGAATTTGGAATTAACCAGTTGGAAAAGTGGTGATGACCCTGGAACTGGGAATTTCACTTTTAAGATGGAGGACAACCGTTTCGTCATCTTAAACCTAGAAGAAACTTATTGGGAGAGTGAAGAGTACGGAATGATGAATCTCAATGCGAAGTTTGATGATTTAGATGACATCAGCTCAGCTGTTTACAATTTGTTGGTCAACTTCACAACATCTAGTTATGTACTGAGCAATACAAGATTGTTCCTTGATTCCACAGGTGTGATACAGTGGGTGAAGAATTTGTTGGAAGGTGATTCGCCGGTTCTATGGAAACAGCCAAGAAGCAAATGTTTAAGATATAATGTTTGTGGAAACTTTGCTAGCTGtaacgatgatgatgatgtgccGTGCAAATGTTTACCTGGATTCTACAATGATAACGTGCTGGGAGATGGCCACTCTTCTCTACAAGACACCGATGGTTGTAAGAGGAGAAAACCAACATCGTGTCCTAGAAATGACGTGGCATTCTTGAACATGACCATGATTAAAACTAGAAGGCCGGATTCAAAGATAACCGCAGAATCTGAAGAAGATTGCCAATCTATATGCCTTGGGAGATGTACAGAGTGCCAAGCTTACTCATATGCTCCACCCGTCGGTCGTGGTCTTATTTCATCAAACTGTTGGATCTGGAATAACAGTTTAACTACTCTCAAAGAAGAGTATACTTATCCGCGGGATGATGATCGTAGACTCATTGTCCTAGTTGATAAATCTGATATAGAACGAACTCCGCGAACATGTGAGCCTTGCGGTACGAACATAGTCCCTTATCCTCTCAGTACAGGATCCAACTGTGGAGACCACAAATACTTCAACTTTGCTTGCAACAACGCAACGAGTCAACTTAGCTTCAAGGCCAACAACAATATTAGTTACACGGTTATTCGTGTAGAGCCCAATACAAGTTCATTTACCATTTTCAATCGCAATGATCAGGATAATTCTTTTGATAGATTTTGTGGTGAAGGATCAAATAGAACAGGATATCTTAAGGTTTCTTCACCGTTTCACAGGGATAATTCTTGCTCTGAACAAGTAGAGGTTAATTGGGATCCACCTTCTGAGCCCGTTTGTGATAACTCTGTTGATTGCCAAGGTTGGAATCATTCTACTTGTACTGGAAACAGGTGTCTTTGCAATGCAAACTATACATGGAATGGCAATTCGTTAAGTTGTACGGAAGCTTTTTCAGAACCCGGATCTTCTCCTAGTGCTAAAAACGCATCAACAAAAGGAAAATCTAAATGGTCGTTCTATTTGATTCTTGGCTTAGTTCTTGCTGGTGTTACTCTGGCATGCATCATTACTTTAGCTTATGCATGCAGAAGAAGAATAGTTCATATGGTTAAGCAAGATAAGGATAGCATACAAAGAAGCAGTAGAGGGAAATTTTACGACAGTGAAAGACATGTGAAGGACTTGATAGACATGGAGGGATTGGAGGAGACTAACAATGAAGGAATAGAAGTTCCCTATTTCGATTTTGAGAGCATACTTATCGCCACAGATGACTTTTCAGATGCAAATAAACTTGGAAAAGGTGGTTTTGGGCCTGTTTATAAGGGTAAGCTTGGTGGGCAAGAAATTGCAGTAAAGAGACTTTCACGTGTTTCATCACAAGGCTTACAGGAATTCAAGAATGAGGTTGTTTTGATTGCTAAACTTCAACATCGAAACCTTGTTAAATTACGGGGCTATTGTGtaaaaggagaagaaaaaattCTAATCTATGAATATTTGCCTAACAAGAGTTTGGACTTGTTGATATTCGATCCGACAAGAGGCGTAATTTTGAATTGGCAAATGCGGTTTGATATCATTCTTGGTATTGCTCGCGGACTGCTCTATCTTCATCAAGATTCAAGACTTAGAGTTATTCACCGAGATTTGAAAACTAGCAACATTCTTCTAGACGAGGAGATGCAACCAAAAATCTCAGATTTTGGACTAGCAAGAATATTATTAGGAGGTAAAGAAATAGAGGCAAGCACCGAGAAGATCGTTGGTACATACGGATACATGTCACCTGAGTATGCATTGGATGGAAGTTTCTCAATAAAATCAGATGTTTTTAGTTTTGGCGTTGTCTTGCTTGAAATCATCAGTGGAAAAAAGAACATAGGATTCTTTCAGTCTAAAGAAGTTTCAAGCCTTTTGGGTTATGCTTGGAGTTTATGGAAAGAGGACAAATTGCTGGATTTAATGGATCCATCTTTATGTGATACTTACAATGCCAACCAATTTATTAGGTGTGCACAAATTGGACTCTTATGTGTACAAGATGAACCTGATGATCGTCCACACATGTCAAATGTGGTGACCATGCTAGACAATGAAACCAAGACCCTTATAACACCTAAACAACCAACCTTTTTTTCACGTAAAGACCTATCTAGTACAGCTTCTTCAAGTCTACAGATTGAGAGTAGCATTCAAGAAGGTCGATAA 3039 0.385 MSSNMGTIYLFFNLYTSWLLICSSQLCLAGDTLSIGEKVIGSDTNLVSTGKMFELGFFAPSITDSSKRYLGIWYHIPEGSEESEQPQNLTVVWVANRDKPIAFDSSGVFQIAKDGNLVVVDTSVIQNKYWSTNLKVKESSKNRTVKLMDSGNLVLLDDRNSELWQSFENPTDTFLPGMKMDMNLELTSWKSGDDPGTGNFTFKMEDNRFVILNLEETYWESEEYGMMNLNAKFDDLDDISSAVYNLLVNFTTSSYVLSNTRLFLDSTGVIQWVKNLLEGDSPVLWKQPRSKCLRYNVCGNFASCNDDDDVPCKCLPGFYNDNVLGDGHSSLQDTDGCKRRKPTSCPRNDVAFLNMTMIKTRRPDSKITAESEEDCQSICLGRCTECQAYSYAPPVGRGLISSNCWIWNNSLTTLKEEYTYPRDDDRRLIVLVDKSDIERTPRTCEPCGTNIVPYPLSTGSNCGDHKYFNFACNNATSQLSFKANNNISYTVIRVEPNTSSFTIFNRNDQDNSFDRFCGEGSNRTGYLKVSSPFHRDNSCSEQVEVNWDPPSEPVCDNSVDCQGWNHSTCTGNRCLCNANYTWNGNSLSCTEAFSEPGSSPSAKNASTKGKSKWSFYLILGLVLAGVTLACIITLAYACRRRIVHMVKQDKDSIQRSSRGKFYDSERHVKDLIDMEGLEETNNEGIEVPYFDFESILIATDDFSDANKLGKGGFGPVYKGKLGGQEIAVKRLSRVSSQGLQEFKNEVVLIAKLQHRNLVKLRGYCVKGEEKILIYEYLPNKSLDLLIFDPTRGVILNWQMRFDIILGIARGLLYLHQDSRLRVIHRDLKTSNILLDEEMQPKISDFGLARILLGGKEIEASTEKIVGTYGYMSPEYALDGSFSIKSDVFSFGVVLLEIISGKKNIGFFQSKEVSSLLGYAWSLWKEDKLLDLMDPSLCDTYNANQFIRCAQIGLLCVQDEPDDRPHMSNVVTMLDNETKTLITPKQPTFFSRKDLSSTASSSLQIESSIQEGR 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01163 1012 Pfam S-locus glycoprotein domain 257 320 IPR000858 GO:0048544
Tsu06g01163 1012 Gene3D Transferase(Phosphotransferase) domain 1 777 987 - -
Tsu06g01163 1012 SMART blect_4 37 170 IPR001480 -
Tsu06g01163 1012 Gene3D - 26 168 IPR036426 -
Tsu06g01163 1012 Pfam Protein tyrosine and serine/threonine kinase 706 973 IPR001245 GO:0004672|GO:0006468
Tsu06g01163 1012 ProSiteProfiles Bulb-type lectin domain profile. 30 168 IPR001480 -
Tsu06g01163 1012 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 1002 - -
Tsu06g01163 1012 CDD PAN_AP_plant 342 423 - -
Tsu06g01163 1012 ProSiteProfiles PAN/Apple domain profile. 345 444 IPR003609 -
Tsu06g01163 1012 CDD B_lectin 39 170 IPR001480 -
Tsu06g01163 1012 CDD STKc_IRAK 708 975 - -
Tsu06g01163 1012 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 24 1002 - -
Tsu06g01163 1012 Gene3D Phosphorylase Kinase; domain 1 666 776 - -
Tsu06g01163 1012 Pfam D-mannose binding lectin 90 185 IPR001480 -
Tsu06g01163 1012 ProSiteProfiles Protein kinase domain profile. 702 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01163 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Tsu06g01163 1012 SUPERFAMILY alpha-D-mannose-specific plant lectins 91 195 IPR036426 -
Tsu06g01163 1012 SUPERFAMILY Protein kinase-like (PK-like) 683 995 IPR011009 -
Tsu06g01163 1012 SMART serkin_6 702 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01163 Tsu-Chr6 10684986 10692244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01163 690 1011 Receptor kinase-like Gene Family AT4G11530 54.848 9.06e-117 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu06g01163 PK_Tyr_Ser-Thr 3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01163 - - mtr:MTR_0148s0080 1417.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01163 06 10684986 10692244 Tsu06g01163 06 10684986 10692244 ECH