Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01161 ATGAAGAAAAAACCACTCTTCACACTTTCTCTCATCATCCTCTTATTACTATCTTTCCACACATACCTTTCACTTTCTGATCTAACCATCATTTCATCAAATCAATCTCTTTCTGGTGATCAAACACTTGTCTCAAAAGATGGTAAATTTGAATTGGGTTTCTTTAATAAAGGTAATTCCTCTAACTACTACATAGGTATGTGGTACAAAAAAATATCTATTAAGACATATGTTTGGGTAGCAAATAGAGATCATCCACTTTCTGATAAAAAATCTTCTAAGTTAGCTATATCTAATGGTAATTTAGTTCTTTTAGATCAGTCTCAAAATCTTGTTTGGTCAACAAATTTGAGTACTAGTTCTAGTAATAGATCAAGTTCTGTTGTTGCTGTTCTTTTAGGTTCTGGTAATCTTATATTAAGTAATACGCCTAATGCGTCGGAATCAGAAGCTCTTTGGCAGAGTTTTGATTTTCCGACGGATACATGGCTTCCTGGTGGTAAGATTAAGCTTGATAAAATAACAAAGAAGCCTCAATATCTTACTTCATGGAAAAACAGCGATGATCCGGCAACAGGTTTATTTTCGCTTGAATTAGACCCGAAAGGAAGCAATTCGTATTTGATTCTTTGGAATAAAACTAAACAGTATTGGACAAGTGGTTCTTGGAATGGACAGATATTTAGTTTGGTTCCTGAAATGAGGTCAAACTACATCTACAATTTTACCTATATGACGAACGCGACTGAGAGTTACTTTACATATTATGTTTATGACAGAACTTTGATATCTCGTTTCGTGATGGATGTTTCGGGGCAAATCAAGCAATTTACTTGGCTTGAAAGTACACAGCAATGGAATTTGTTTTGGTCACAGCCAAGAGGACAGTGTCAGGTTTATGCTTTCTGTGGTGCATTTGGTAGCTGTAATGAGAATTCAAAGCCATATTGCAATTGCTTGAATGGTTATGAACCGAAGTCGCAATCTGATTGGGATCTTGGTGATTACTCACATGGTTGTGTGAAAAGAAACAAGTTTCAATGTGAGGTATCTTCTAATCCTTCTAGTGGTGCTAAGGATAGGTTCTTAACCAAATCCAATGTGGCTTTGCCTGAAGATGCAAAACAAGTTGTGGAAGCTGGTTCAATAGATCAATGTGAGTCAACCTGTTTGAGTAACTGTTCTTGCAATGCATATGCTTATAACACTAGCGGATGTTTCGTTTGGCGAGGACAACTCTTGAATCTGCAACAGCTTTCTCAAGATGATAGTAATGGACAGACTTTGTTTCTCAAACTTGCAGCATCGGAGTTTTCTGATTCGAAAAGCAATAAAGGGACAACCATTGGTATTGTTGCTGGTGCGGTTGGTGGTATAGCAGTtattcttgttcttgttctaaTCGTCGTGATTAGGCGAAGAAAAAGACTTGCTGGAGCAAGAACTACTGTGGAGGGTTCATTGATAGCATTTGCATACCGAGATTTGCAAACTGCTACAAAGAATTTCTCAGACAAACTTGGAGGAGGAGGTTTTGGTTCTGTCTTCAAAGGAACATTACCTGATTCAAGCGTCATAGCAGTGAAGAAACTTGAAAGCATTAGCCAAGGCGAGAAGCAGTTTCGAACAGAAGTGAGTACAATCGGGACTGTCCAACACGTCAACCTCGTTAGACTTCGTGGTTTCTGTTCCGAAGGTGACAAAAGGCTTCTGGTTTATGATTACATGCCAAATGGGTCTTTGGATTCAAGTCTGTTTCAAGAAAATGTGTTGGATTGGAAAGTAAGATACCAAATTGCTCTCGGAATAGCAAGAGGATTGACTTATCTTCATGAAAAATGTAGAGACTGTATCATTCACTGTGACGTGAAGCCGGAAAACATTCTCATAGATTCTGATTTTTGTCCAAAAGTAGCAGACTTCGGTCTTGCAAAGCTTGTCGGAAGGGACTTCAGCAGGGTCCTCACTACCATGAGAGGAACAAGAGGTTATCTAGCTCCAGAATGGATTTCAGGAGTGGCTATAACCGCTAAAGCCGATGTTTACAGCTACGGAATGATGCTTTTTGAGATCGTTTCGGGTAGACGGAACTCTGATCCTTCCAAAGATGGTCAAGTTAAATTCTTTCCTACATTGGCTGCAAACCTAGTACACCAAGGAGGGAATGTGATTAGCCTATTGGACTCAAGATTGGATGGAGATGCCGATGTTGAAGAGATCACTAGAGTCATAAAAATAGCTTCGTGGTGTGTTCAAGATGATGAAGCTCATAGGCCATCCATGGGTCAAGTAGTTCAAATACTTGAAGGGGTTTTGGATGTGACATTGCCTCCAATTCCAAGATCACTTCAAGCTTTTATTGATGACCATGAGGACATTGTTTTCTTCACCGATTCAAGCTCGACTCATGACTCACAGGTAAAGAGCAATGTTTCTACAGTCTCATCTCAACCCAAAAGCAACATCTCTTCTGCTAGCACATAG 2484 0.3897 MKKKPLFTLSLIILLLLSFHTYLSLSDLTIISSNQSLSGDQTLVSKDGKFELGFFNKGNSSNYYIGMWYKKISIKTYVWVANRDHPLSDKKSSKLAISNGNLVLLDQSQNLVWSTNLSTSSSNRSSSVVAVLLGSGNLILSNTPNASESEALWQSFDFPTDTWLPGGKIKLDKITKKPQYLTSWKNSDDPATGLFSLELDPKGSNSYLILWNKTKQYWTSGSWNGQIFSLVPEMRSNYIYNFTYMTNATESYFTYYVYDRTLISRFVMDVSGQIKQFTWLESTQQWNLFWSQPRGQCQVYAFCGAFGSCNENSKPYCNCLNGYEPKSQSDWDLGDYSHGCVKRNKFQCEVSSNPSSGAKDRFLTKSNVALPEDAKQVVEAGSIDQCESTCLSNCSCNAYAYNTSGCFVWRGQLLNLQQLSQDDSNGQTLFLKLAASEFSDSKSNKGTTIGIVAGAVGGIAVILVLVLIVVIRRRKRLAGARTTVEGSLIAFAYRDLQTATKNFSDKLGGGGFGSVFKGTLPDSSVIAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGDKRLLVYDYMPNGSLDSSLFQENVLDWKVRYQIALGIARGLTYLHEKCRDCIIHCDVKPENILIDSDFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEIVSGRRNSDPSKDGQVKFFPTLAANLVHQGGNVISLLDSRLDGDADVEEITRVIKIASWCVQDDEAHRPSMGQVVQILEGVLDVTLPPIPRSLQAFIDDHEDIVFFTDSSSTHDSQVKSNVSTVSSQPKSNISSAST 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01161 827 Gene3D Transferase(Phosphotransferase) domain 1 576 775 - -
Tsu06g01161 827 ProSiteProfiles PAN/Apple domain profile. 348 434 IPR003609 -
Tsu06g01161 827 Pfam S-locus glycoprotein domain 218 327 IPR000858 GO:0048544
Tsu06g01161 827 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 6 798 - -
Tsu06g01161 827 PIRSF SRK 1 819 IPR024171 GO:0004674
Tsu06g01161 827 CDD STKc_IRAK 507 770 - -
Tsu06g01161 827 Gene3D - 26 156 IPR036426 -
Tsu06g01161 827 SMART serkin_6 501 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01161 827 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 6 798 - -
Tsu06g01161 827 SMART ntp_6 357 433 IPR003609 -
Tsu06g01161 827 Gene3D Phosphorylase Kinase; domain 1 467 575 - -
Tsu06g01161 827 ProSitePatterns Protein kinases ATP-binding region signature. 507 530 IPR017441 GO:0005524
Tsu06g01161 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Tsu06g01161 827 Pfam PAN-like domain 358 415 IPR003609 -
Tsu06g01161 827 MobiDBLite consensus disorder prediction 802 827 - -
Tsu06g01161 827 CDD PAN_AP_plant 355 434 - -
Tsu06g01161 827 SUPERFAMILY Protein kinase-like (PK-like) 485 769 IPR011009 -
Tsu06g01161 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 224 IPR036426 -
Tsu06g01161 827 CDD B_lectin 34 159 IPR001480 -
Tsu06g01161 827 SMART blect_4 34 159 IPR001480 -
Tsu06g01161 827 Pfam Protein kinase domain 504 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01161 827 ProSiteProfiles Protein kinase domain profile. 501 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01161 827 Pfam D-mannose binding lectin 76 185 IPR001480 -
Tsu06g01161 827 ProSiteProfiles Bulb-type lectin domain profile. 28 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01161 Tsu-Chr6 10662034 10664686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01161 439 774 Receptor kinase-like Gene Family AT1G56120 44.898 6.57e-79 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu06g01161 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01161 - - gmx:100305421 1241.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01161 06 10662034 10664686 Tsu06g01161 06 10662034 10664686 ECH
Tsu02g04871 02 57848895 57851582 Tsu06g01161 06 10662034 10664686 PCT