Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01154 ATGAGAACTGCGAAAGGATCAAGTTCTGTTGTAGCAGTCCTTTTAGATTCTGGTAATCTTATATTAAGTAATACGCCTAATGCATCCGAATCTGAAGCTCTTTGGCAGAGTTTTGATTTTCCAACAAATACATGGCTTCCTGGTGGCAAAATTAAACtgaataaaataacaaagaagCCTACAAATCTTACTGCATGGAAAAACAGTGAAGATCCAGCAACAGGGGCAGGTCAAGCAATTTTCTTGGCTCGAAAGTACTCAGAGCTGGAATTTGTTTTGTCACAATCTGATTGGGATCTTGGTGACTACTCACATGGTTGTGTGAAAAGAAACAAGTTTCAATGTGAGGTATCTTTCAATCCTTCTAGTGGTGCTAAGGATAAGTTCTTATCCAAATCCAATCTGGCTTTGCCTGAAGATGCAAAACATGTTGTGGAAGCTGGTTTAGTTGATGAATGTGAGTCAACCTGTTTGAGCAACTGTTCTTGCACTACATATGCTTATAACAGTACAGGTTGTTTCATTTGGATGGGAGAGCTCTTGAATCTGAAACAGATTTCACCAGATGATAGTAATGGACAGACTTTGTTTCTAAAACTTGCAGCATCTGAGTTTTCTGATTCTAAAAGCAACAAAGGGACAACAGCCATTGGTATTGTTTCTGGTGTGAATGCTACCAAGAATTTCTCAGACAAACTTGGAGGAGGaggttttggttctgttttcaAAGGAACATTACCCGATTCAAGTGTCGTAGCAGTGAAGAAACTCGAAAGCATAAGCCAAGGTGAGAAGCAGTTTCGAACAGAAGTGAGTACTATTGGGACTGTCCAACATGTCAACCTTGTTAGGCTTCGTGGTTTCTGTTCTGAAGGCGACAAAAAGCTTCTGGTTTATGATCACATGCCAAATGGATCTTTGGATTCAAGTCTGTTTCAAGAAAAGGTGTTGGATTGGAAAGTAAGATACCAAATTGGTCTCGGAATAGCTAGAGGATTGACTTATCTTCATGAAAAGTGTAGAGACTGTATCATTCACTGTGACATGAAACCGGAAAACATTCTCATAGATTCTGATTTTTGTCCAAAGGTAGCAGATTTCGGCCTTGCAAAGCTTGTTGGAAGGGACTTCAGCAGGGTCCTCACTACCATGAGAGGAACAAGAGGTTATCTAGCTCCTGAATGGATATCAGGAGTAGCTATTACCGCTAAAGCCGGTGTTTACAGCTACGGAATGGTGCTTTTTGAGCTCGTTTCAGGTAGACGGAACTCTGATCCTTCCGCAAATGGTCAAGTTAAATTCTTTCCTACATTGGCTGCCAACGTAGTACACCATGGTGGGAATGTGATTAGCCTATTGGACTCGAGATTGGATGGAGATGCTGATGTTGGAAAGATCGCTAGAGTCATAAAAATAGGTTCATGGTGTGTTCAAGATGATGAAGCTCATAGGCCATCCATGGGTCAAGTAGTTCAAATACTTGAAGGGGTTTTGGATGTGACTTTGCCTCCAATTCCAAGATCACTTCAAGCTTTTATTGATGACCATGAAGACATAGTTTTCTTCACTGATTCAAGCTCAACTCATAACTCACAGGTAAAGAGCAATGTTTCTACAGCCTCATCTCAAGCCAAAAGCAACATATCATCTGTATCACCTTAA 1662 0.3989 MRTAKGSSSVVAVLLDSGNLILSNTPNASESEALWQSFDFPTNTWLPGGKIKLNKITKKPTNLTAWKNSEDPATGAGQAIFLARKYSELEFVLSQSDWDLGDYSHGCVKRNKFQCEVSFNPSSGAKDKFLSKSNLALPEDAKHVVEAGLVDECESTCLSNCSCTTYAYNSTGCFIWMGELLNLKQISPDDSNGQTLFLKLAASEFSDSKSNKGTTAIGIVSGVNATKNFSDKLGGGGFGSVFKGTLPDSSVVAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGDKKLLVYDHMPNGSLDSSLFQEKVLDWKVRYQIGLGIARGLTYLHEKCRDCIIHCDMKPENILIDSDFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKAGVYSYGMVLFELVSGRRNSDPSANGQVKFFPTLAANVVHHGGNVISLLDSRLDGDADVGKIARVIKIGSWCVQDDEAHRPSMGQVVQILEGVLDVTLPPIPRSLQAFIDDHEDIVFFTDSSSTHNSQVKSNVSTASSQAKSNISSVSP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01154 553 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 94 222 - -
Tsu06g01154 553 CDD PAN_AP_plant 122 201 - -
Tsu06g01154 553 Pfam D-mannose binding lectin 4 67 IPR001480 -
Tsu06g01154 553 MobiDBLite consensus disorder prediction 528 553 - -
Tsu06g01154 553 SUPERFAMILY Protein kinase-like (PK-like) 221 528 IPR011009 -
Tsu06g01154 553 Pfam Protein kinase domain 230 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01154 553 Pfam PAN-like domain 125 182 IPR003609 -
Tsu06g01154 553 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 224 524 - -
Tsu06g01154 553 SMART ntp_6 124 200 IPR003609 -
Tsu06g01154 553 CDD STKc_IRAK 233 496 - -
Tsu06g01154 553 Gene3D Transferase(Phosphotransferase) domain 1 302 501 - -
Tsu06g01154 553 SUPERFAMILY alpha-D-mannose-specific plant lectins 5 72 IPR036426 -
Tsu06g01154 553 ProSitePatterns Protein kinases ATP-binding region signature. 233 256 IPR017441 GO:0005524
Tsu06g01154 553 Gene3D Phosphorylase Kinase; domain 1 198 301 - -
Tsu06g01154 553 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 6 75 - -
Tsu06g01154 553 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 224 524 - -
Tsu06g01154 553 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 6 75 - -
Tsu06g01154 553 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 94 222 - -
Tsu06g01154 553 SMART serkin_6 227 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01154 553 ProSiteProfiles Protein kinase domain profile. 227 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01154 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Tsu06g01154 553 ProSiteProfiles PAN/Apple domain profile. 115 201 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01154 Tsu-Chr6 10587606 10589737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01154 224 504 Receptor kinase-like Gene Family AT5G20050 42.333 6.52e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu06g01154 Pkinase 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01154 - - gmx:100782119 693.345