Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu06g01153 | atggCTAGAACTCCTTCATGTGACAAAAGTGGAATGAGGAAAGGAACTTGGACAGCTGAAGAAGATAGGAAATTAATAGCTTATGTAAGTAGATATGGTTGCTGGAATTGGCGCCAACTCCCTAAGTTTGCAGGTCTTGCAAGATGTGGGAAGAGTTGTAGATTGAGGTGGATGAATTATCTGAGGCCTAATATCAAAAGAGGCAATTTCACTCAACAAGAAGAAGATTTGATTATTAAGATGCATAAAAAGCTTGGTAATAGATGGTCAACCATTGCCGCGGAGTTACCAGGAAGAACAGATAACGAAGTGAAGAACCACTGGCATACTTCCCTCAAGAAGAGAGTTCAACACAACACAATCACAAATATTGAAGAAACCAAATCAAGAGATATTGCCATTTCTCAAGTTACTACTCCAGCTAGCTCCCAAGACACTAATGGCCCATTATCCCCAATTTCATCATCAAGTGAATTCTCTTCCACAACATATTCAGATCAGAGTTCCACTCATGATTTGGATGACTTTGATTTTCTTGATGGATTTATAGAATCTATGGATCAAAGTTTTTGGCTGGATGAGCTTTCCACAATTGTGCAAGACAATACTAGTTGTGCTTTTCTAAATCAAGATACTACCTTTTTAGTGTCTCCCAATCATTCGTCCAATGAAAGTAGTTTGGTTTTGGATAATGACTTTAGCAGCTTTCTAGATTCTTATGAAGTTGATAGTTTTTGGACACAACCATATGAGGCTGCCACCATGTCCCACGTTCTATACAACCAACAATGGGGTTGCTTAGAATGA | 807 | 0.3841 | MARTPSCDKSGMRKGTWTAEEDRKLIAYVSRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNIKRGNFTQQEEDLIIKMHKKLGNRWSTIAAELPGRTDNEVKNHWHTSLKKRVQHNTITNIEETKSRDIAISQVTTPASSQDTNGPLSPISSSSEFSSTTYSDQSSTHDLDDFDFLDGFIESMDQSFWLDELSTIVQDNTSCAFLNQDTTFLVSPNHSSNESSLVLDNDFSSFLDSYEVDSFWTQPYEAATMSHVLYNQQWGCLE | 268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu06g01153 | 268 | CDD | SANT | 69 | 112 | IPR001005 | - | |
| Tsu06g01153 | 268 | Gene3D | - | 68 | 136 | - | - | |
| Tsu06g01153 | 268 | CDD | SANT | 16 | 61 | IPR001005 | - | |
| Tsu06g01153 | 268 | Pfam | Myb-like DNA-binding domain | 67 | 110 | IPR001005 | - | |
| Tsu06g01153 | 268 | Pfam | Myb-like DNA-binding domain | 14 | 61 | IPR001005 | - | |
| Tsu06g01153 | 268 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 61 | IPR017930 | - | |
| Tsu06g01153 | 268 | Gene3D | - | 14 | 66 | - | - | |
| Tsu06g01153 | 268 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 62 | 116 | IPR017930 | - | |
| Tsu06g01153 | 268 | ProSiteProfiles | Myb-like domain profile. | 9 | 61 | IPR001005 | - | |
| Tsu06g01153 | 268 | SMART | sant | 66 | 114 | IPR001005 | - | |
| Tsu06g01153 | 268 | SMART | sant | 13 | 63 | IPR001005 | - | |
| Tsu06g01153 | 268 | SUPERFAMILY | Homeodomain-like | 11 | 108 | IPR009057 | - | |
| Tsu06g01153 | 268 | MobiDBLite | consensus disorder prediction | 138 | 169 | - | - | |
| Tsu06g01153 | 268 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 1 | 220 | - | - | |
| Tsu06g01153 | 268 | PANTHER | MYB-RELATED TRANSCRIPTION FACTOR | 1 | 220 | - | - | |
| Tsu06g01153 | 268 | ProSiteProfiles | Myb-like domain profile. | 62 | 112 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu06g01153 | Tsu-Chr6 | 10579894 | 10581287 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu06g01153 | 1 | 191 | MYB Transcription Factor Family | AT1G06180 | 50.785 | 3.98e-62 | 194 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Tsu06g01153 | Myb_DNA-binding | 1.3e-12 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu06g01153 | K09422 | - | gmx:778087 | 300.056 |