Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01149 atGGCAAGAACTCCTTCATGTGACAAAAGTGGAAAGAGGAAAGGAACTTGGACTGCTGAAGAAGATAGGAAATTAATAGCTTATGTAAGTAGATATGGTTGCTGGAATTGGCGCCAACTACCTAAGTTTGCAGGTCTAGCAAGATGTGGAAAGAGTTGTAGATTGAGGTGGTTGAATTATTTAAGGCCTAATATCAAAAGAGGGAATTTCACTCAACAAGAAGAAGATTTGATTATCGAGATGCATAAAAAGCTTGGCAATAGATGGTCAACCATTGCGGCGGAGTTACCTGGACGAACAGATAACGAAGTGAAGAACCATTGGCATACTTCCCTCAAGAAGAGAGTtcaaaacaacacaaacacaaatattGAAGAAACCAAAGTTACCAAATCAAGAGATATTGGCATTTTGCAAGTTACTACTCCAGCTAGTTCCCAAGACACCAATGGCCCAttatctccattttcatcatcaAGTGAATTCTCTTCTACAACATATTCAGACCATAGTTCCACTcatgattttgatgattttggttTTCTTGATGGATTTATAGAATCTATGGATCAAAGTTTTTGGATGGATGACCTTTCCACAAATGTGCAAAACAATACTAGTTGTGCTTTTCAAAATCAAGATACTACTATTTTAGTGTCTCCTAATCATTCCTCTAATGAAAGTTTGGTATTGGATAATGACATTGCCAGCTTTCTAGATTCGTACAAAGAGTCAACAGTTGATAGTTTTTGGACACAACCATATGAAGCTGACATGTCCCACGTTCTAAACTACAATCATTGGGGTTTCTCAGAATTTTGA 822 0.3491 MARTPSCDKSGKRKGTWTAEEDRKLIAYVSRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPNIKRGNFTQQEEDLIIEMHKKLGNRWSTIAAELPGRTDNEVKNHWHTSLKKRVQNNTNTNIEETKVTKSRDIGILQVTTPASSQDTNGPLSPFSSSSEFSSTTYSDHSSTHDFDDFGFLDGFIESMDQSFWMDDLSTNVQNNTSCAFQNQDTTILVSPNHSSNESLVLDNDIASFLDSYKESTVDSFWTQPYEADMSHVLNYNHWGFSEF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01149 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu06g01149 273 MobiDBLite consensus disorder prediction 141 160 - -
Tsu06g01149 273 CDD SANT 69 112 IPR001005 -
Tsu06g01149 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu06g01149 273 Gene3D - 68 135 - -
Tsu06g01149 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu06g01149 273 CDD SANT 16 61 IPR001005 -
Tsu06g01149 273 SMART sant 13 63 IPR001005 -
Tsu06g01149 273 SMART sant 66 114 IPR001005 -
Tsu06g01149 273 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 229 - -
Tsu06g01149 273 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 229 - -
Tsu06g01149 273 Gene3D - 14 66 - -
Tsu06g01149 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu06g01149 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu06g01149 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu06g01149 273 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01149 Tsu-Chr6 10557223 10558291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01149 1 204 MYB Transcription Factor Family AT2G31180 48.529 7.61e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g01149 Myb_DNA-binding 7.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01149 K09422 - gmx:100777107 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01149 06 10557223 10558291 Tsu06g01149 06 10557223 10558291 ECH