Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01148 atggCTAGAACTCCATCATGTGACAAAAATGGAATGAGGAAAGGAACTTGGACTGCTGAAGAAGATAGGAAATTAATAGCTTATGTAAGTAGATATGGTTGTTGGAATTGGCGACAACTCCCTAAGTTTGCAGGTCTTTCAAGATGTGGAAAGAGTTGTAGATTAAGATGGATGAATTATCTAAGGCCTAATATCAAAAGAGGCAATTTCACTCAACAAGAAGAAGACTTGATCATCAGAATGCATAAAAAGCTTGGCAATAGATGGTCAACCATTGCGGCGGAGTTACCTGGAAGAACAGATAACGAAGTGAAGAACCATTGGCATACTTCCCTCACGAAGAGAGTTCAAAACAACACAATCACAAATATTGaagaaaccaaatcaaaactcatTATTGAATCCACACAAGGGATGGATATTTCTTCTTTACAATTACTTACTCCTCAAGTTAATTCCCAAGACACCAATGGCCCAttatctccattttcatcatcaAGTGAATTGTCTTCCTCAACATCTTCTGATCAAAGTACTACTcatgattttgatgattttggttTTCTTGATGCATTCATGGAATCTATGGATCAAAGTTTTTGGTTGGATGATCTTTCTGAAATAGTGCAAGACAACACAATTGATGCTTTTTTAGTGTCTTCCAATCATTCGTCCATTGAAAGTAATTTGGTTTTGGATAATGACTTTGGCAGCTATTTAGATGACAGTTTTTGGACACAACCATATGAATTAGCTGACATGTCCCACGATCTATACCACAATCATTGGGGTTTCTCAGAATTTTGA 807 0.3408 MARTPSCDKNGMRKGTWTAEEDRKLIAYVSRYGCWNWRQLPKFAGLSRCGKSCRLRWMNYLRPNIKRGNFTQQEEDLIIRMHKKLGNRWSTIAAELPGRTDNEVKNHWHTSLTKRVQNNTITNIEETKSKLIIESTQGMDISSLQLLTPQVNSQDTNGPLSPFSSSSELSSSTSSDQSTTHDFDDFGFLDAFMESMDQSFWLDDLSEIVQDNTIDAFLVSSNHSSIESNLVLDNDFGSYLDDSFWTQPYELADMSHDLYHNHWGFSEF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01148 268 CDD SANT 69 112 IPR001005 -
Tsu06g01148 268 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Tsu06g01148 268 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu06g01148 268 CDD SANT 16 61 IPR001005 -
Tsu06g01148 268 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu06g01148 268 MobiDBLite consensus disorder prediction 151 179 - -
Tsu06g01148 268 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu06g01148 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Tsu06g01148 268 Gene3D - 68 135 - -
Tsu06g01148 268 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 224 - -
Tsu06g01148 268 Gene3D - 14 66 - -
Tsu06g01148 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu06g01148 268 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu06g01148 268 SMART sant 13 63 IPR001005 -
Tsu06g01148 268 SMART sant 66 114 IPR001005 -
Tsu06g01148 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01148 Tsu-Chr6 10533493 10534299 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01148 1 206 MYB Transcription Factor Family AT2G31180 48.544 5.92e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g01148 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01148 K09422 - gmx:778087 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01148 06 10533493 10534299 Tsu02g04876 02 57891927 57893858 PCT