Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01146 atgGCAAGAACTCCTTCATGTGACAAAAATGGAATGAGGAAAGGAACTTGGACTGCTGAAGAAGATAGGAAATTAATAGCATATGTAAGTAGATATGGTTGCTGGAATTGGCGACAACTCCCTAAGTTTGCAGGTCTTGCAAGATGTGGTAAGAGTTGTAGATTGAGGTGGTTGAATTATTTAAGGCCTAATATCAAAAGAGGACATTTCACTCAACAAGAAGAAGATTTGATTATCAAGATGCATGGAAACCTTGGCAATAGATGGTCTTTGATTGCTGAAAAACTACCAGGAAGAACGGATCATGAGATAAAGAACTATTGGCATAGCTATCTAAAAAAGTGCTTAAAGAGCTACGAGAACACAATTTTGGACTTGAAAATGAAACCATGTGATATTGTTGAAGAAAATGATACTCATGATTCTGTAGCACCCAAAAGCCCAATTTCTAATGTTGGTAAGGACtttcaatatattttagaaagCTCAACATTGCCGATGCCTGCGGATGAAACATCACCTGAAGACAATTCGACTAGCTCAACGAACAGCCGCggaatagaagaagagaatGTTGCTCCGTGGTTAGCGTTTGAAGCATTCAGCGGCGATTTTTGGACAGAACCATTCATCATAGAAGATACATACACCACTAATGAGATATCAAATGAAGACATAGACTTGTTGATTTCAGACTTCTATGATGGTTCATATATGTTTTAG 723 0.3638 MARTPSCDKNGMRKGTWTAEEDRKLIAYVSRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPNIKRGHFTQQEEDLIIKMHGNLGNRWSLIAEKLPGRTDHEIKNYWHSYLKKCLKSYENTILDLKMKPCDIVEENDTHDSVAPKSPISNVGKDFQYILESSTLPMPADETSPEDNSTSSTNSRGIEEENVAPWLAFEAFSGDFWTEPFIIEDTYTTNEISNEDIDLLISDFYDGSYMF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01146 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu06g01146 240 SMART sant 66 114 IPR001005 -
Tsu06g01146 240 SMART sant 13 63 IPR001005 -
Tsu06g01146 240 Gene3D - 14 66 - -
Tsu06g01146 240 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 187 - -
Tsu06g01146 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu06g01146 240 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 187 - -
Tsu06g01146 240 CDD SANT 16 61 IPR001005 -
Tsu06g01146 240 CDD SANT 70 112 IPR001005 -
Tsu06g01146 240 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu06g01146 240 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu06g01146 240 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu06g01146 240 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu06g01146 240 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu06g01146 240 Gene3D - 69 130 - -
Tsu06g01146 240 MobiDBLite consensus disorder prediction 166 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01146 Tsu-Chr6 10475092 10493647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01146 1 116 MYB Transcription Factor Family AT1G06180 68.966 8.09e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g01146 Myb_DNA-binding 6.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01146 K09422 - csin:114269202 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04876 02 57891927 57893858 Tsu06g01146 06 10475092 10493647 PCT