Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01145 ATGGTAAGAGCACcttattttgatgaaaatggaacaaAGAAAGGTGCATGGAGTTTGGAAGAGGATCAGAGGCTTATTGCTTACATTGAAAGATATGGTCATCCAAATTGGCGTCAACTTCCCAAAATTTCCGGTTTGGCAAGATGTGGAAAGAGTTGTAGGCTACGTTGGATGAATTACTTGAGGCCAAATCTAAAACGTGGGAACTATACACAAAAGGAGGAACAAATGATCATGGAATTGCACAAAAAGCATGGAAATAAATGGTCTCTTATCGCCGAAAGTCTACCGGGAAGATCGGACAATGAAATCAAGAATTACTGGCACAGCCACCTAAAGAAAATCTCACAGCACAACGAGACCAACCTTATTAAAGAGACTCaaaagacaaaaacaacaaGTGAGGATGTTAGTGATGATTCCCACCACATTAAAGAGACTCaaaagacaaaaacaacaaGTGAGACTGAGGATGTTAGTGATGATTCCCACCACATTTTGGAAAGTTCAACTTCAATGTCCTCTAGTCATGTGGAATTAAACATGAACTTGTATAGAAAAGAAGAGAGTGTTGCTTCTTGGGAAATATGGGATGGATTCAGCAACAATTTTTGGTCTGAACCATTTATTTCAGAAAATGCATTGGGTCAGGATTACTCTCCCATTTCATGGTATGGATCAGAGGCAGAGGATCCATTTTTCATATGGTAG 711 0.3699 MVRAPYFDENGTKKGAWSLEEDQRLIAYIERYGHPNWRQLPKISGLARCGKSCRLRWMNYLRPNLKRGNYTQKEEQMIMELHKKHGNKWSLIAESLPGRSDNEIKNYWHSHLKKISQHNETNLIKETQKTKTTSEDVSDDSHHIKETQKTKTTSETEDVSDDSHHILESSTSMSSSHVELNMNLYRKEESVASWEIWDGFSNNFWSEPFISENALGQDYSPISWYGSEAEDPFFIW 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01145 236 CDD SANT 69 112 IPR001005 -
Tsu06g01145 236 CDD SANT 16 61 IPR001005 -
Tsu06g01145 236 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu06g01145 236 SMART sant 13 63 IPR001005 -
Tsu06g01145 236 SMART sant 66 114 IPR001005 -
Tsu06g01145 236 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tsu06g01145 236 MobiDBLite consensus disorder prediction 129 161 - -
Tsu06g01145 236 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu06g01145 236 PANTHER MYB TRANSCRIPTION FACTOR 1 227 - -
Tsu06g01145 236 Gene3D - 69 115 - -
Tsu06g01145 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu06g01145 236 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu06g01145 236 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu06g01145 236 Gene3D - 7 67 - -
Tsu06g01145 236 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 227 - -
Tsu06g01145 236 MobiDBLite consensus disorder prediction 119 161 - -
Tsu06g01145 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01145 Tsu-Chr6 10464803 10467150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01145 1 175 MYB Transcription Factor Family AT2G31180 48.603 6.87e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g01145 Myb_DNA-binding 5.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01145 K09422 - gmx:100781032 313.923