Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01132 ATGAGTTGGTCTTCCTTTTATAACACAGCCTCAAGGGTTTTTCATGAGTATCCATCTTGGTCCAAGACTCTTGTTGTATGCACATTCATTAgTGGTGGAGGTATAGTGGCATATGGTGATGGCAGAGCAGCAGCATATAGTGATTGTGGTGATCAAATCCCAAAAAAGAAAGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACcacttttgtgaaaaatatgaaaaactcCTCTTATGATATTCATGTGGTTTCACCTCGTAATTATTTTGCATTCACTCCTTTGCTACCAAGTCTCACGTGTGGCACAGTCGAGGCACGTAGCATTATCGAACCAATTCGAAATATCAGCAAAAAGAGTGGTTTAGATATTGAATTCAGTGAAGCTGAGTGCTATAAGATTGATCCGAAGAACAACAAAGTTTACTGCAGAGCTGCTCATCAAGACAAAAAGCTTGGTGGAATAGACGAATTTTCCATTGATTATGATTACTTAGTAATCGCTATGGGAGCTCGTTCTAATACCTTTAACACACCCGGTGTTCAGGAGCATGCCTACTTCCTGAAGGAAGTGGAAGATGCTTTAAGAATCCGGAAAAAAGTGATTAATCTGTTTGAAAGAGCAAGTCTCCCTTCTGTATCGGTGGAAGAGAAGAAAAAGCTTCTGAGTTTTGTAGTTGTTGGTGGTGGTCCGACTGGTGTAGAGTTTGCTGCAGAATTACATGACTTTGTGCATGATGATTTGTCGAAATTATATCCTTCTCTTATGGACCATGTCACGATAACTCTCCTTGAGGCTGGCGATCATATCTTAAACATGTTTGACAAGAGAATAACAGAATTTGCTGAAGGAAAGTTCAAAAGAGATGGAATCGATGTGAAATTGGGATCTATGGTTGTGAATGTTGGTGAAAAAGATATAACATCCAAAGAAAGAGGAAGTGGTCAAGTTGTTACTATGCCCCATGGGATGGTAGTTTGGTCAACTGGTATCGGTGTTCGTCCTGAAATTCTTGATTTCATGAAGCAACTTGGCCAGATTAATCGGCGTGCATTGGTCACTGATGAATGGCTAAGGGTGGAAGGGTGTGACAACATCTATGCTTTAGGTGATTGTGCCACTATAAATCAACGTAGAGTTATGGAAGATATAGCAGTTATATTTAGTAAGGCGGACAAGGAAAATTCCGGAATGTTAGATCTTAAAGAATTTCAAAACGTTGTTGACGACATTATCGAGAGGTATCCACAAGTTGACATTTATTTAAAGAAGAATCAAATGAAGGACATGGCTACTTTGCTAAACAAAGCTCAGGAAAGCCCTGCCACTACTGTGGACATTGAATACTTTAAACAAGCTGTTTCCAAAGTTGATTCTCAGATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCTCAACAAGGAGCATATCTTGCAGACTGTTTCAATCGCATGGAATTGTGCGAGAAATATCCGGAAGGTCCTTTAAGGTTTAGGGGAACAGGACGCCATCGGTTTCATGCCTTCAGGTACAAACATTTGGGACAATTTGCTCCTCTTGGTGGAGAACAAACTGCAGCTCAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGCCAATGGTTGTGGTATTCAGTATATGCAAGCAAACAAGTGAGCTGGAGAACAAGAGCTTTGGTGATATCTGACTGGGGAAGGCGATTTGTATTTGGAAGGGACTCAAGTGAAATATGA 1737 0.4041 MSWSSFYNTASRVFHEYPSWSKTLVVCTFISGGGIVAYGDGRAAAYSDCGDQIPKKKVVVLGTGWAGTTFVKNMKNSSYDIHVVSPRNYFAFTPLLPSLTCGTVEARSIIEPIRNISKKSGLDIEFSEAECYKIDPKNNKVYCRAAHQDKKLGGIDEFSIDYDYLVIAMGARSNTFNTPGVQEHAYFLKEVEDALRIRKKVINLFERASLPSVSVEEKKKLLSFVVVGGGPTGVEFAAELHDFVHDDLSKLYPSLMDHVTITLLEAGDHILNMFDKRITEFAEGKFKRDGIDVKLGSMVVNVGEKDITSKERGSGQVVTMPHGMVVWSTGIGVRPEILDFMKQLGQINRRALVTDEWLRVEGCDNIYALGDCATINQRRVMEDIAVIFSKADKENSGMLDLKEFQNVVDDIIERYPQVDIYLKKNQMKDMATLLNKAQESPATTVDIEYFKQAVSKVDSQMKNLPATAQVAAQQGAYLADCFNRMELCEKYPEGPLRFRGTGRHRFHAFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVISDWGRRFVFGRDSSEI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01132 578 SUPERFAMILY FAD/NAD(P)-binding domain 217 376 IPR036188 -
Tsu06g01132 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 58 77 - -
Tsu06g01132 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 223 241 - -
Tsu06g01132 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 162 180 - -
Tsu06g01132 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 351 373 - -
Tsu06g01132 578 Pfam Pyridine nucleotide-disulphide oxidoreductase 56 382 IPR023753 GO:0016491
Tsu06g01132 578 PANTHER NAD(P)H DEHYDROGENASE B2 74 578 - -
Tsu06g01132 578 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Tsu06g01132 578 PANTHER NADH DEHYDROGENASE 74 578 IPR045024 GO:0003954|GO:0006116
Tsu06g01132 578 SUPERFAMILY EF-hand 373 464 IPR011992 -
Tsu06g01132 578 SUPERFAMILY FAD/NAD(P)-binding domain 55 275 IPR036188 -
Tsu06g01132 578 Gene3D - 50 431 - -
Tsu06g01132 578 Gene3D - 446 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01132 Tsu-Chr6 10254566 10259125 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01132 5 578 Chloroplast and Mitochondria Gene Families AT4G21490 67.586 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01132 K03885 - gmx:100820044 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01132 06 10254566 10259125 Tsu06g01132 06 10254566 10259125 ECH