Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01131 ATGACgatttcttctttcttcatcAGAGCCTCTAAGGCTATAAACAACCGCCCTTTCTGCTCCGgccttcttcttctctgcaCTATCAGTGGTGGAGGTGTGGTGGCACTCTCAGAATCACAATCAGAAGCTCAACGTCCTAATATTGAAGATCATCAGCCCCGAAAAAAGAAAGTTGTGGTCCTTGGAACTGGATGGGCTGCTACCAGTTTCCTTAAGGGTTTGGATGCTTCAATGTATGATGTCCAAGTTGTTTCGCCTCGTAACTACTTTGCATTTACTCCCTTATTACCGAGTGTCACTTGTGGATCAGTTGAAGCACGGAGCATCGTAGAACCGATCCGAAACATCATTCAAAagAGTAAAGGagaaataaaattttgggaGGCAGAATGTGTCAAGATTAATGCTGCAGACAAAAAGGTTTTTTGTCGGTCTAATATTGAAAACTTAGTAGGAAGTGGTGATTTTTCTCTGGACTATGACTTCTTGATTGTATCAGTAGGAGCACAAGTAAATACTTTTAATACCCCTGGTGTCAAGGAGAACTGTCATTTTCTGAAGAATGTCGAGGACGCTCAAAAGATCAGACTGTCTGTGATAGATTGTCTTGAGAAGGCTGTTCTTCCTAGTCAATCCGAAGAGGAGCAAAGGTCAAATCTTCATTTTGTAATTGTTGGAGGAGGACCAACTGGTGTCGAATTTGCTGCAGAGCTGCATGATTATATCCAAGAAGATTTGATCAAATTATACCCAACCGTTAAAGATAAAGTGAAGATAACGTTAATTCAATCTGGAGATCACATCTTGAATATGTTTGATGAAAGAATAAGTTCGTTTGCTGAGCAGAAGTTTAGGAGAGATGGTATAGAAGTTCAAACTGGATGCCGGGTTTTGAGTGTTAATGACAAGGAGATTACAATGAAGGCGAAATCAACAGGAGCGGTTTCCTCTGTGCCACATGGATTGATTATCTGGTCCACCGGAATTTCTACTCTTCCAGTTATACGGGACTTTATGGAAGAAATTGGTCAGGTTAAAAGGCATGTACTTGCAACTGATGAATGGTTGAGAGTACAGGGATGTAAAGATGTGTTTGCAATTGGTGATTGTTCATCAATAAATCAACGTAAAATCATGGATGATATCTTGCACATATTTAAGGCTGCAGACAAAAATAACTCTGGGACCTTAACTGTAGAAGAATTCGAAGAAGTGATGGATGACATAATCTTAAGATATCCTCAAGTTGAATACTATCTACAGAAGAACCATATACTTGATTTGAGGGTTCTGTGGAACGACCCAGAAGggaatgaaagaaaagaaatagacgTAGAAGGGTTAAAACAGGCACTTTCTTTTGCAGATTCACAGGTGAAGACTCTTCCAGCAACTGCACAGGTTGCGGCTCAACAAGGTGCATATCTAGCTAGTTGCTTTAACCACGTTGATGTTTGTTTAGACCATCCAGAAGGACCTCGACGATTTTCAGGATCCGGACATCATATGTTTCGTCCCTTCCGGTATAAACATTTTGGGCAATTTGCTCCACTGGGTGGGGAGCAGGCAGCAGCAGAACTTCCTGGAGACTGGGTTTCCATTGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACACGGTATTTGGTGGTATCCGATTGGActagaaaattcatatttggaAGGGATTCAAGTCGAGTTTGA 1734 0.395 MTISSFFIRASKAINNRPFCSGLLLLCTISGGGVVALSESQSEAQRPNIEDHQPRKKKVVVLGTGWAATSFLKGLDASMYDVQVVSPRNYFAFTPLLPSVTCGSVEARSIVEPIRNIIQKSKGEIKFWEAECVKINAADKKVFCRSNIENLVGSGDFSLDYDFLIVSVGAQVNTFNTPGVKENCHFLKNVEDAQKIRLSVIDCLEKAVLPSQSEEEQRSNLHFVIVGGGPTGVEFAAELHDYIQEDLIKLYPTVKDKVKITLIQSGDHILNMFDERISSFAEQKFRRDGIEVQTGCRVLSVNDKEITMKAKSTGAVSSVPHGLIIWSTGISTLPVIRDFMEEIGQVKRHVLATDEWLRVQGCKDVFAIGDCSSINQRKIMDDILHIFKAADKNNSGTLTVEEFEEVMDDIILRYPQVEYYLQKNHILDLRVLWNDPEGNERKEIDVEGLKQALSFADSQVKTLPATAQVAAQQGAYLASCFNHVDVCLDHPEGPRRFSGSGHHMFRPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01131 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 378 IPR023753 GO:0016491
Tsu06g01131 577 SUPERFAMILY EF-hand 340 458 IPR011992 -
Tsu06g01131 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Tsu06g01131 577 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 53 577 - -
Tsu06g01131 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Tsu06g01131 577 SMART efh_1 382 410 IPR002048 GO:0005509
Tsu06g01131 577 Gene3D - 436 577 - -
Tsu06g01131 577 Gene3D - 46 405 - -
Tsu06g01131 577 PANTHER NADH DEHYDROGENASE 53 577 IPR045024 GO:0003954|GO:0006116
Tsu06g01131 577 SUPERFAMILY FAD/NAD(P)-binding domain 56 274 IPR036188 -
Tsu06g01131 577 SUPERFAMILY FAD/NAD(P)-binding domain 221 375 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01131 Tsu-Chr6 10247041 10253386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01131 5 577 Chloroplast and Mitochondria Gene Families AT4G21490 62.111 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01131 K03885 - gmx:100793566 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01131 06 10247041 10253386 Tsu06g01131 06 10247041 10253386 ECH