Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01116 ATGGCTCCGCCAAAATCTAAAGTAAAACAAGTGTTTATGCTCCTATGTTTCTCTCTTCTTCGGATGTCCATTGCGGATGCGGACGATGGAGATTTCATGTCAAAGCTATTAAAATCTCTAAGTCCTACCCCGTCAGGCTGGTCAGCGAGCAACTCCTTTTGCAACTGGAAGGGTGTAAAATGTGACTTAACAAACCGCGTAACATCTATCAACCTTGCTTCCAAGTCACTCAATGGTACACTTCCTTCGAATCTCAACTCGCTTTCCCAACTCACCTACCTCTATCTCCACTCCAACTCTCTCTCCGGCCCATTACCCTCACTCGCCAACCTCGCCATGCTTCAAACAGTTTTCCTTGGCGGGAACTACTTCATCTCCATCCCCGACAGTTGCTTCCAAGGATTAACCAGTCTCCAGAAACTCTCCATGGCCAGCAACATCAACCTCGCTCCATGGACGTTTCCCATCGAGTTGTCAGAGTCTCCCAACCTCGTCTCACTTGACCTCGGAGAAACCAACCTCATGGGTCACCTGCCGGATATGTTCGATACTTTAGTCAGTTTGCAGGACCTCCGCCTTTCATATAACAAACTAATGGGGGGTTTACCCATGTCTTTCTCGGGATCTGGTATTCAGAACCTGGACAACAACACGTTTGGAATCACGGGTTCTATATCCGTGCTTGCTTCAATGATCCACTTGACTCAAGTTTGGCTTATGGAAAACAGCTTCACCGGTCAGATTCCTGATTTCACCAACTGTACCACTTTATTTGATCTGCAGCTTTGTGATAATCAATTAACAGGTGTTGTTCCACCATCTTTAATGCTTATGTCTAGCTTGCAGAATGTTACCTTGGACAACAATTATTTGCAGGGGCCTTTGCCTTCTTTTGGGAAAGGTGTAAAGTTCGATCTTGATAGGATTAAAAACTTCTGTCAAAACACTTCTGAACCTTGTGATCCACGCGTCACTACTTTGCTCTATATTGCAGAAGATTTTGGGTATCCACTTCAATTGGCAAATTCTTGGAAAGGGAACGATCCTTGTCAAGATTGGAATTTCATTGTGTGTTCAGCAGGGAACATTATTACAGTGAACTTAGCCAAGCAGCAATTAGAGGGAGCTATTTCACCTGCATTTGGAAATTTAACTGATTTGAGGAACTTGTATTTGGGTGATAACAATTTGACAGGTTCAATACCTCGGAGTTTGACAGGTTTGGTGTTTCTTGAGGTTCTTGATTTATCTAACAACAATCTATCTGGTGAGATTCCTAAATTCTCATCTATAGTGAGATTCAATTCAACCGGTAATGTTTTGCTTCAACATGGAAGTCTGCATAAAAACACACCCGCTTCTGCGCCGTTGCTTAAAAACACAACCGATTCTGTGCCGTTGCTGGCTTGGATTCTAGGGGCATCATTGTTTGGTGTAGGAGCTATACTATTTATTGTGATTCTTTGTAGTCGTAAGGGATATATAAGATTAGTAAAGACAAGGATCTTCAAGAAACCAGGAATATTCATTGATCACGATATTGAGGATTTCATAAAAAGATATAATTTGTCGGTGCCGCAGCAGTATAGTTATGCAGAAGTGAAAAGGTTCACAAACTCGTTTCGAGATAAGTTGGGTCAAGGAGGATATGGTGTTGTGTACAGAGCCAGTTTACCTGATGGTCGCCATGTAGCGGTGAAAGTAATAAGCAAGTGTAAGGGAAATGGAGAAGAATTTATAAATGAAGTTGCAAGCATAACTAAAACATCACATGTGAACATTGTCTCACTTTTGGGTTTTTGTTATGAGAAGAACAAAAGAGCATTGATATATGAACTCGTGTCCAATGGATCATTAGATAAGTTCATATATCGTAGTGGATTTCCAAATGCTATTTGTGATTTGGATTGGAACACATTGTTCCAAATTGTACTTGGCATTGCTCGAGGACTAGAGTACTTACATCAAGGTTGTATTTCAAGAATTTTGCATCTTGATATCAAACctcaaaatattcttttagaTGAAGATTTTTGCCCAAAAATATCTGATTTTGGTTTGGCTAAAATATGTCAAAAGAAAGAGAGTATTGTGTCAATGCTTGGCACAAGAGGAACTATAGGCTACATAGCACCAGAAGTATTTAGTCGAGCATTCGGTGGAGTTTCTTCTAAATCTGATGTATATAGTTATGGCATGTTGATTCTTGAAATGACGGGAGGAAGAAAGAATTATGATACTGGAGGATCTCATAAGACCGAAATGTACTTTCCAGATTGGATATATAAGGATCTTGAGCAAGGTAATACTCATTTAAATAGTTCGGCAATctcagaagaagaaaatgatatGGTGAAGAAGATTACTATGGTGAGTTTGTGGTGCATTCAAACAAATCCATCGGACAGACCACCAATGAGTAAAGTAATAGAAATGCTACAAGGACCACTTCATTCAATGCCGTATCCTTCAAAGCCTGTCTTATTTTCTCCAAAAGGGCCATCATTGCAAATGTCAGATATGTCTTCCAGTAATTTTAACGACTCAAATTCAATTATGATAGAGTAG 2568 0.398 MAPPKSKVKQVFMLLCFSLLRMSIADADDGDFMSKLLKSLSPTPSGWSASNSFCNWKGVKCDLTNRVTSINLASKSLNGTLPSNLNSLSQLTYLYLHSNSLSGPLPSLANLAMLQTVFLGGNYFISIPDSCFQGLTSLQKLSMASNINLAPWTFPIELSESPNLVSLDLGETNLMGHLPDMFDTLVSLQDLRLSYNKLMGGLPMSFSGSGIQNLDNNTFGITGSISVLASMIHLTQVWLMENSFTGQIPDFTNCTTLFDLQLCDNQLTGVVPPSLMLMSSLQNVTLDNNYLQGPLPSFGKGVKFDLDRIKNFCQNTSEPCDPRVTTLLYIAEDFGYPLQLANSWKGNDPCQDWNFIVCSAGNIITVNLAKQQLEGAISPAFGNLTDLRNLYLGDNNLTGSIPRSLTGLVFLEVLDLSNNNLSGEIPKFSSIVRFNSTGNVLLQHGSLHKNTPASAPLLKNTTDSVPLLAWILGASLFGVGAILFIVILCSRKGYIRLVKTRIFKKPGIFIDHDIEDFIKRYNLSVPQQYSYAEVKRFTNSFRDKLGQGGYGVVYRASLPDGRHVAVKVISKCKGNGEEFINEVASITKTSHVNIVSLLGFCYEKNKRALIYELVSNGSLDKFIYRSGFPNAICDLDWNTLFQIVLGIARGLEYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKESIVSMLGTRGTIGYIAPEVFSRAFGGVSSKSDVYSYGMLILEMTGGRKNYDTGGSHKTEMYFPDWIYKDLEQGNTHLNSSAISEEENDMVKKITMVSLWCIQTNPSDRPPMSKVIEMLQGPLHSMPYPSKPVLFSPKGPSLQMSDMSSSNFNDSNSIMIE 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01116 855 Gene3D Phosphorylase Kinase; domain 1 513 613 - -
Tsu06g01116 855 Gene3D Ribonuclease Inhibitor 322 445 IPR032675 -
Tsu06g01116 855 Gene3D Transferase(Phosphotransferase) domain 1 614 820 - -
Tsu06g01116 855 SMART LRR_typ_2 185 208 IPR003591 -
Tsu06g01116 855 SMART LRR_typ_2 88 110 IPR003591 -
Tsu06g01116 855 SMART LRR_typ_2 384 407 IPR003591 -
Tsu06g01116 855 SMART LRR_typ_2 408 430 IPR003591 -
Tsu06g01116 855 SMART LRR_typ_2 111 134 IPR003591 -
Tsu06g01116 855 PANTHER OSJNBA0070M12.3 PROTEIN 13 814 - -
Tsu06g01116 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Tsu06g01116 855 SUPERFAMILY L domain-like 38 431 - -
Tsu06g01116 855 ProSiteProfiles Leucine-rich repeat profile. 410 432 IPR001611 GO:0005515
Tsu06g01116 855 Pfam Leucine rich repeat N-terminal domain 327 359 IPR013210 -
Tsu06g01116 855 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Tsu06g01116 855 Gene3D Ribonuclease Inhibitor 31 319 IPR032675 -
Tsu06g01116 855 SUPERFAMILY Protein kinase-like (PK-like) 521 813 IPR011009 -
Tsu06g01116 855 SMART serkin_6 539 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01116 855 Pfam Protein kinase domain 543 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01116 855 PANTHER RECEPTOR-LIKE KINASE TMK4 13 814 - -
Tsu06g01116 855 Pfam Leucine rich repeat 366 421 IPR001611 GO:0005515
Tsu06g01116 855 ProSitePatterns Protein kinases ATP-binding region signature. 545 567 IPR017441 GO:0005524
Tsu06g01116 855 ProSiteProfiles Protein kinase domain profile. 539 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01116 Tsu-Chr6 10091283 10094040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01116 527 850 Receptor kinase-like Gene Family AT5G38280 58.006 6.90e-129 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu06g01116 Pkinase 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01116 - - cam:101489592 954.896