Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01103 ATGAGATACTTATCCTGGACGCAAAAACTACTACACTTGACAACGCATGCTTGCGTGGATCCTAAAATGAATGTTTCTAATTCTATCTACCATGAAGAGCCATATAACTTACGAGtagTGCTCTGCCCAATTGCTCATGCTATTGTTGAATTAGGAAATGAAGTAGTGGAGAGGAATTTCACAACAAAGAACATGGAGACTGTTCTTTCCAAACACTCCCCACCTTCAGCCTTCAAGGGTGTTAGCAAGGAGGAGGAAGAATCATTGCTTGGACAAATTGAAATATGGAAATACATGACACAATTCACAGACTCTTTTGCTCTAAAAGCTGTCGTTGAGCTACGCATAGCGGACATAATAGACCGCTATGGTAAGCCACTATCCTTAACTCAAATTGTGCAAAATCTTGACGATGCACCTTCCCCTGATTCAACTCTACTCTTAAGAGTAATGAGAGTGATGGTTCGTCGAAAGATTTTCAGCGCAGAAAAATCAGAAACCGGAGAGATTCTCTACGGTTTAACACGTGCATCGAAATGGATTCTACAAGACACAAAATTGACATTGGCACCAATGTTGTTGCTAGAGAATCACCCTTTTCATTTGAACCCTGCTAACTATATAAGTGAAATTGTAAGAGAAGGAACAAAAGATGGCACTGCTTTCTTTAGGTGTCATGGTCATGAACAATTTGAAATGACAGGTTTGGATGCAAAATACAATGATTTGTTTAATCAAGGTATGGTTTGTACTGCTAGGATTGTGTCTAGAGCTGTTATTGCTGGATACAAAGATGgttttaatcaaattaaatcTTTGGTTGATGTTGGTGGTGGTATTGGAGGATCACTCTCTGAGATTGTTAGAGCTTATCCTCACATTCAAGCTATTAACTTTGATTTGCCTCATGTTGTTTCAACTGCACCTAATTTTGATGGTATCACCCATGTTGGAGGAGACATGTTTGTTTCTGTTCCTAGTGCTGATGCTATCTACATGAAGTGGATTCTTCACGACTGGAGCGACGACCATTGCATAAAGATATTGAAGAACTGTAGGAAAGCAATACCAGAGAAAACTGGAAAGGTGATCATTGTAGATCATGTACTTGATCCAGAAGGAAGTGAACCATTTACTGACACTGGCATAGCATTTGACATGATGTTGCTTGCACACAATGCTGGTGGTAAAGAAAGAACTGAAGAGAACTGGCAATACCTATTCAAAGAGACAGGATTCCCTCGTTAcaacatcatcaaaatcaatgcTCTTCCATCAATCATTGAAGCATTTCCAATCTAA 1302 0.384 MRYLSWTQKLLHLTTHACVDPKMNVSNSIYHEEPYNLRVVLCPIAHAIVELGNEVVERNFTTKNMETVLSKHSPPSAFKGVSKEEEESLLGQIEIWKYMTQFTDSFALKAVVELRIADIIDRYGKPLSLTQIVQNLDDAPSPDSTLLLRVMRVMVRRKIFSAEKSETGEILYGLTRASKWILQDTKLTLAPMLLLENHPFHLNPANYISEIVREGTKDGTAFFRCHGHEQFEMTGLDAKYNDLFNQGMVCTARIVSRAVIAGYKDGFNQIKSLVDVGGGIGGSLSEIVRAYPHIQAINFDLPHVVSTAPNFDGITHVGGDMFVSVPSADAIYMKWILHDWSDDHCIKILKNCRKAIPEKTGKVIIVDHVLDPEGSEPFTDTGIAFDMMLLAHNAGGKERTEENWQYLFKETGFPRYNIIKINALPSIIEAFPI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01103 433 Gene3D - 78 181 IPR036388 -
Tsu06g01103 433 PANTHER O-METHYLTRANSFERASE 84 432 IPR016461 GO:0008168
Tsu06g01103 433 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 188 430 IPR029063 -
Tsu06g01103 433 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 84 432 - -
Tsu06g01103 433 Gene3D Vaccinia Virus protein VP39 183 433 IPR029063 -
Tsu06g01103 433 CDD AdoMet_MTases 273 370 - -
Tsu06g01103 433 SUPERFAMILY "Winged helix" DNA-binding domain 85 184 IPR036390 -
Tsu06g01103 433 Pfam Dimerisation domain 107 155 IPR012967 GO:0046983
Tsu06g01103 433 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 96 432 IPR016461 GO:0008168
Tsu06g01103 433 Pfam O-methyltransferase domain 207 413 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01103 Tsu-Chr6 10012130 10020560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01103 106 419 Monolignol Biosynthesis Gene Families AT5G54160 38.318 1.23e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01103 K22588 - gmx:100812768 662.529