Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01100 ATGAAGAGTGAAAAATCAACCAAAGATGAGATTACAAAAGTGATTAATGAAATTGAAAGTAAACAATGTGAGATGGAAAAGggaaaggaaaagatgtttgtTGAAGATGTTTCCATGCAACAAAGGCCTCTCAAGAAGATTTGTATCCCTCAACACCAAGACATAAATCAACCATCCTCTCATCAACCTCCTTCATCTAAAATAGTTTTTCCTTTTGCTTTTGAAGGTTCTCAATTTCCAATATCATTCCcacacaaatcaaaaacaacaatttttttgccTCCTTTTTCTCCACCTTTTGAGCCCCAACGAAACACGGGGTATCAACTATCGCCAATTTCAGCTCCCAATTCTGTTTTACCTTGCCAACGACAACAGATTCAGAATAAGCAGCTTCTTAGGCCTCAAACGCGGCCTTTGAATGGTACAAAACTGTATAGAGGAGTGAGGCAACGCCATTGGGGAAAATGGGTGGCTGAGATTCGTCTTCCTCGAAATAGAACTCGTCTCTGGCTTGGAACATTTGACAATGCTGAAAATGCTGCCATGGCATATGATCGTGAGGCTTTTAAGCTAAGAGGAGAAAATGCTAAGCTCAATTTCCCGGAACTCTTCCTTAACAAAGATAAACCACcaccaacatcatcatcatccgcAATAGCTCAAACTTCATCTGCTCCTTCGCTACTTGAAGGTTCaagttcaacatcaacatcatgCCAGAAGACAAATCAACCAGAATCGGTTCATAACGAACATAGCTTGCAAGCTATCAATGCTTCAAAAACCGGGGAAAGCAATTCCCAACCGGTTTTAGGAGAAATGGCGGGTTGGTTGGAGGCAATTCCAGCAGGTTGGGGTCCAGGTAGCCCTATATGGGACGATTTGGACCCCAACGGTAATCTTCTTTTGCAGTCACAGTTTCCATTTTTTAATCCAAATCAGCAAGAATTTCATGTTATAAGTGATGCTACTCAGAGACAACAAGAAGATAACACAGGACCAGGCTCTACCTCTTGA 1020 0.3794 MKSEKSTKDEITKVINEIESKQCEMEKGKEKMFVEDVSMQQRPLKKICIPQHQDINQPSSHQPPSSKIVFPFAFEGSQFPISFPHKSKTTIFLPPFSPPFEPQRNTGYQLSPISAPNSVLPCQRQQIQNKQLLRPQTRPLNGTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDNAENAAMAYDREAFKLRGENAKLNFPELFLNKDKPPPTSSSSAIAQTSSAPSLLEGSSSTSTSCQKTNQPESVHNEHSLQAINASKTGESNSQPVLGEMAGWLEAIPAGWGPGSPIWDDLDPNGNLLLQSQFPFFNPNQQEFHVISDATQRQQEDNTGPGSTS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01100 339 Pfam AP2 domain 146 194 IPR001471 GO:0003700|GO:0006355
Tsu06g01100 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 23 325 - -
Tsu06g01100 339 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Tsu06g01100 339 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700|GO:0006355
Tsu06g01100 339 Gene3D AP2/ERF domain 145 203 IPR036955 GO:0003700|GO:0006355
Tsu06g01100 339 ProSiteProfiles AP2/ERF domain profile. 145 202 IPR001471 GO:0003700|GO:0006355
Tsu06g01100 339 MobiDBLite consensus disorder prediction 210 252 - -
Tsu06g01100 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 23 325 - -
Tsu06g01100 339 MobiDBLite consensus disorder prediction 204 252 - -
Tsu06g01100 339 SUPERFAMILY DNA-binding domain 145 203 IPR016177 GO:0003677
Tsu06g01100 339 SMART rav1_2 145 208 IPR001471 GO:0003700|GO:0006355
Tsu06g01100 339 CDD AP2 144 204 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01100 Tsu-Chr6 9991486 9992505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01100 132 296 AP2-EREBP Transcription Factor Family AT2G20880 53.333 9.11e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g01100 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01100 - - cam:101497734 347.821