Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01083 ATGCACCTCCAATTTAGTTCCAATCTcaacctcttcttcttcttcggcttGACGCTGAAACTCGCGCTGCTGCAGACGGCGGTTGGACAACTTCAGCACCATAAACTCGACCAACATTGGTATCCTGGAACCGCCACCTGGTACGGTGACCCTGAAGGAGATGGCAGTACCGGTGGAGCCTGTGGGTATGGAACATTGGTGGATGTAAAGCCGTTAAGGGCGAGGGTAGGGGCGGTGGGATCGGTTCTGTTTATGAAAGGGGAAGGGTGTGGAGCTTGTTACAAAGTGAAGTGCTTAGACAATAGCATATGTTCTAGGAGAGCCGTTACGGTCATAATTACCGATGAGTGTCCCGGCTGCCCCACTGACCAGACTCACTTTGACCTCAGCGGTGCTGCTTTTGGACATATGGCTATCTCCGGCGAGAATGGTCAACTCAGGAACCGCGGTCAAATTCCTGTTATTTACCGAAGAACACCGTGTAAATATCCAGGGAAAAAAATTGCCTTCCATGTTAACGAAGGTTCCACGCCATTTTGGTTATCGCTTCTAGTTGAATTTGAAGATGCAGAGGGAGATATTGGCACTATGCATATACGAGAAAATGGTTCTAGTGAGTGGCTGCAGATGAATCATCTATGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGGGGACCATTTTCTGTTAAACTAAGCTCTTCCACTGGTAGAAGCCTATCAGCTAGAGATGTTATTCCTACCAATTGGGTTCCAAAGGCCACTTACACTTCTCGACTTAATTtctacccttaa 798 0.4574 MHLQFSSNLNLFFFFGLTLKLALLQTAVGQLQHHKLDQHWYPGTATWYGDPEGDGSTGGACGYGTLVDVKPLRARVGAVGSVLFMKGEGCGACYKVKCLDNSICSRRAVTVIITDECPGCPTDQTHFDLSGAAFGHMAISGENGQLRNRGQIPVIYRRTPCKYPGKKIAFHVNEGSTPFWLSLLVEFEDAEGDIGTMHIRENGSSEWLQMNHLWGANWCIIGGPLRGPFSVKLSSSTGRSLSARDVIPTNWVPKATYTSRLNFYP 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01083 265 Pfam Expansin C-terminal domain 168 248 IPR007117 -
Tsu06g01083 265 Gene3D - 25 161 IPR036908 -
Tsu06g01083 265 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Tsu06g01083 265 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Tsu06g01083 265 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Tsu06g01083 265 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Tsu06g01083 265 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Tsu06g01083 265 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Tsu06g01083 265 PANTHER EXPANSIN-LIKE PROTEIN B1 6 265 - -
Tsu06g01083 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
Tsu06g01083 265 SUPERFAMILY Barwin-like endoglucanases 36 165 IPR036908 -
Tsu06g01083 265 Gene3D - 162 260 IPR036749 -
Tsu06g01083 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
Tsu06g01083 265 Pfam Lytic transglycolase 81 155 IPR009009 -
Tsu06g01083 265 PANTHER EXPANSIN-B3 6 265 - -
Tsu06g01083 265 SMART dpbb_1 76 156 IPR007112 -
Tsu06g01083 265 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Tsu06g01083 265 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Tsu06g01083 265 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Tsu06g01083 265 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Tsu06g01083 265 PRINTS Major pollen allergen Lol pI signature 235 252 IPR005795 GO:0005576|GO:0019953
Tsu06g01083 265 SUPERFAMILY PHL pollen allergen 166 259 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01083 Tsu-Chr6 9843265 9846731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01083 17 202 Expansin Gene Family AT4G28250 70.430 5.63e-94 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01083 K20628 - gmx:100804525 481.87