Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01078 ATGGCCTTAGATCAGTACATGAACAACGCTGCGTCCCAACTTGACTCCTTTGAAGATAAACCATCTTTGAAAAACTGGAAAACCTCCACAGATGTGATTTCAGATTCTGATAGAAGTTCATCTGGCGGTTTCGACTGCAACATCTGCCTGGATTGTGTGCAAGATCCAGTAGTAACTTTTTGTGGTCATCTTTACTGTTGGCCTTGCATTTACAAATGGCTTCATGTACAAAGTAGTATCACTTCCGAAAATGAAGAGAAACAGAAGCCAAAATGTCCGGTATGCAAATCAGAACTCTCTCAATCTTCCTTGGTTCCATTATACGGCCGTGGCCAATCCACAACAACCTCCGAAGGCAAGTCTCAAACTCATCAAGTAGGGATTGTTGTACCTCGAAGACCTACGGGCCCTAGATTATATAATGCTACAACTGTTTCCCAACCTACTTATCAAACTTATCATCATCCTCAACAATTCAACTCAATTCCTAATAGTTACCCCTCACCGATGTTTAGTACAAGTGGTTCGTCACTAGACAATACATACGGAATCTTCGGCGAAATGATATATGCAAGTGTGTTTGGTAACCAGGTGGAAAACATGTATACATATCCTAATTCATATAGTTTTATAGGGAATAATAATCCAAGGGTTAGAAGACATTTGATGCAAGTTGACAGATCACTCAGCAGAATATGTTTTTTCCTCCTTTGTTGCTTAGTTTTGTGTCTTCTCTTATTCTAA 744 0.3965 MALDQYMNNAASQLDSFEDKPSLKNWKTSTDVISDSDRSSSGGFDCNICLDCVQDPVVTFCGHLYCWPCIYKWLHVQSSITSENEEKQKPKCPVCKSELSQSSLVPLYGRGQSTTTSEGKSQTHQVGIVVPRRPTGPRLYNATTVSQPTYQTYHHPQQFNSIPNSYPSPMFSTSGSSLDNTYGIFGEMIYASVFGNQVENMYTYPNSYSFIGNNNPRVRRHLMQVDRSLSRICFFLLCCLVLCLLLF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01078 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 247 - -
Tsu06g01078 247 CDD RING-HC_AtRMA_like 44 97 - -
Tsu06g01078 247 Pfam RING-type zinc-finger 46 93 IPR027370 -
Tsu06g01078 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 115 IPR013083 -
Tsu06g01078 247 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Tsu06g01078 247 ProSiteProfiles Zinc finger RING-type profile. 46 96 IPR001841 -
Tsu06g01078 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu06g01078 247 SMART ring_2 46 95 IPR001841 -
Tsu06g01078 247 SUPERFAMILY RING/U-box 45 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01078 Tsu-Chr6 9812500 9816103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01078 39 247 C3H Transcription Factor Family AT4G28270 39.906 4.03e-47 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01078 K10666 - gmx:100785491 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01078 06 9812500 9816103 Tsu06g01078 06 9812500 9816103 ECH