Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01075 ATGAATAGCAGTAACGGAGGAGGGATGATGGGTTTCAGTAAATCAGCAGCATCAGCATCATCATCACCTTTTACAGTGTCTCAGTTTCAGGAACTTGAACATCAAGCCTTGATCTTTAAATATATGGTTTCTGGTCTTCCTGTTCCACCTGATCTTGTCCTTCCTATTCAGACTACTGCCTTTCACTCTAACAATTTCTTCCACCATCCTATTCCCACCTTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCCGAGCCAGGAAGATGTAGGAGGACTGATGGAAAAAAATGGAGGTGCGCGAAGGAAGCATACCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGTAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGGCACAGTCGTCATCCACTGTGACATCTCTGACTGTCGCTGGTGGCGGCAGCAGAGCTGGAAACTTCCAGAACCTTCCCTCAACAAATGCCTTTGGTAGTCCTCAAAATACTACTGCTTCTGGAACCGGCCGTGCTGATTATCATCTTGATACCATTCCCTATGGGATTCCAAGTAAAGACTACAGGTATCTTCAAGGTCTTAAATCTGAGGGTGGAGAACGTAGCTTCTTTGCAGAAGGTTCAGGAGGAGGCAACAAGGGTCTCCAAATGGAGTCGCAGCTGGAAAACGCATGGCCTTTGATGTCAACCAGAGTTTCCTCTTATTCTGCCTCAAAATCAAGTCATAATTCCATGTTGCAAAGTGATTATCCCCGGCATTCATTTTTATCTAGTGAATATGGATCTGGTGAAGCTGTGAAGGAAGAGGGCCAACCTCTCCGACGCTTTTTCAATGAATGGCCTAAGAGCAGGGAGTCAAGCTCTCAGTCGCCACACGATAACTAG 900 0.4656 MNSSNGGGMMGFSKSAASASSSPFTVSQFQELEHQALIFKYMVSGLPVPPDLVLPIQTTAFHSNNFFHHPIPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCAKEAYPDSKYCERHMHRGRNRSRKPVESQTMAQSSSTVTSLTVAGGGSRAGNFQNLPSTNAFGSPQNTTASGTGRADYHLDTIPYGIPSKDYRYLQGLKSEGGERSFFAEGSGGGNKGLQMESQLENAWPLMSTRVSSYSASKSSHNSMLQSDYPRHSFLSSEYGSGEAVKEEGQPLRRFFNEWPKSRESSSQSPHDN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01075 299 PANTHER - 21 296 IPR031137 GO:0005634|GO:0006351|GO:0032502
Tsu06g01075 299 Pfam QLQ 23 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu06g01075 299 MobiDBLite consensus disorder prediction 273 299 - -
Tsu06g01075 299 PANTHER GROWTH-REGULATING FACTOR 5 21 296 - -
Tsu06g01075 299 SMART QLQ_2 22 58 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu06g01075 299 MobiDBLite consensus disorder prediction 117 176 - -
Tsu06g01075 299 MobiDBLite consensus disorder prediction 262 299 - -
Tsu06g01075 299 ProSiteProfiles QLQ domain profile. 23 58 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu06g01075 299 ProSiteProfiles WRC domain profile. 85 129 IPR014977 -
Tsu06g01075 299 MobiDBLite consensus disorder prediction 126 176 - -
Tsu06g01075 299 Pfam WRC 86 128 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01075 Tsu-Chr6 9774110 9778504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01075 9 128 GRF Transcription Factor Family AT3G13960 57.258 9.62e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Tsu06g01075 WRC 2.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01075 - - gmx:100787226 413.305