Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01047 ATGACTTCTACAGTGACTTCACGTTTTCATGAATCCTTCACCAAAAATGCACTTCGTTCTTATCTTGCAGAATTTATCTCAACTTTTTTCTATGTCCTTATTGTTATTGGCTCTGGAATGTCCTCAAGGAAATTGATGCCTGATGCATCACTGAACCCAACAAGTTTGGTTGTGAGTGCTATTTCAAATGCTTTTGCACTTTCATCTGTTTTGTATATTGCATGGGAAATCACAGGTGGACATGTTAATCCTGCTGTGACCTTTGCAATGGCAGTTGGAGGTCATATTAGTGTCCCAACTGCTCTCTTTTATTGGGTTGCTCAACTTATTGCCTCTGTTATTGCCTGCCTTTTCCTCAAAGTTATTGTTGTTGGAATGCATGTACCAACATACACAATTGCAGAAGAGATGACAGGATTTGGAGCATCAGTATTAGAGGGTACCCTAACATTTGTATTAGTGTATACAATATATGCTGCAAGAGACACTAGACGTGGACGAGTAAGTTCAACAGGAACACTTATAATAGGTTTAATAACAGGAGCAAGTGTTTTAGCAGCAGGTCCATTTTCTGGTGGTTCAATGAATCCTGCATGTGCTTTTGGTTCTGCTTCAATTGCTGGAACATTCAGGAATCAAGCTGTTTATTGGGTTGGTCCTTTGGTTGGTGCTGCTGTTGCTGGTCTTCTTTATGATAATGTCTTGTTCCCTTCTCAGAATTCAGATGAAAATGTTAGGGtgtaa 744 0.3938 MTSTVTSRFHESFTKNALRSYLAEFISTFFYVLIVIGSGMSSRKLMPDASLNPTSLVVSAISNAFALSSVLYIAWEITGGHVNPAVTFAMAVGGHISVPTALFYWVAQLIASVIACLFLKVIVVGMHVPTYTIAEEMTGFGASVLEGTLTFVLVYTIYAARDTRRGRVSSTGTLIIGLITGASVLAAGPFSGGSMNPACAFGSASIAGTFRNQAVYWVGPLVGAAVAGLLYDNVLFPSQNSDENVRV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01047 247 SUPERFAMILY Aquaporin-like 9 241 IPR023271 -
Tsu06g01047 247 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Tsu06g01047 247 PANTHER AQUAPORIN-8 4 244 IPR034294 -
Tsu06g01047 247 Pfam Major intrinsic protein 15 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g01047 247 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g01047 247 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g01047 247 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g01047 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g01047 247 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g01047 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu06g01047 247 Gene3D Glycerol uptake facilitator protein. 2 245 IPR023271 -
Tsu06g01047 247 PANTHER AQUAPORIN TIP5-1-RELATED 4 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01047 Tsu-Chr6 9557981 9559645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01047 3 241 Major Intrinsic Protein MIP AT3G47440 62.762 4.00e-108 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01047 K09873 - gmx:100801448 417.542