Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu06g01037 | ATGGAGAAATACTTAAGAGAGAACTTTTTCGTGCAACCCAAGCGACCATCGGAAGACGCTCTTCGCCGATGGAGATCTGCTGTATCCGTTGTCAAAAATCCCCGTCGCCGCTTCCGATGGGTTGCCAATCTAGCACAACGCGCGGACGCAGAACAAAAACGCAAGAAGCTTCAGGAAAAGATTCGAGTGGCTCTCTATGTACAAAAAGCAGCATTGCATTTTATAACTGCTGGAAGCCGACCAACCGGTAAATACATGCTCTCCAAAGAGACTCAAGAAGCAGGTTTCGGCATTGAACCGGATGAATTAGCATCCATCATTAGATCCCACGACACTAAATGTTTAGAACAACATGAAGGAGTTGAAGGATTAGCAAAAGCTGTGCGCGTATCGTTTAAAGAAGGCGTTAATTCCAGCGACATAAAACATAGACAAGCTATTTACGGTCATAACCGTCATGCCGAGAAACCCTCAAGGAgttttttgatgtttgtttgGGATGCAATGCAAGACTTAACACTAAACATCCTTATTCTATGTTCTGTTGTTTCAATTGTTGTCGGAATCTTAACCGAAGGCTTTCCTAAAGGTATGTATGATGGAGTTGGGATCATACTATGTATTATTTTAGTGGTTCTTGTCACTTCAATAAGTGATTATAAACAGTCTTTGCAATTTAAGGATTTGgataaagagaagaaaaatgtcAGCATTCATGTTACAAGAGATAGTAGAAGACAAACGGTTTCGATTCATGATCTAGTCGTTGGAGATATAGTTCATCTCGCAATCGGAGACATAGTTCCTGCTGATGGAATATTCGTATCAGGTTTTAGTTTATTGATTGATGAATCGAGTTTATCCGGTGAGAGTGAAGCCGTGAatgttgatcaacaaaagcCTTTTCTTCTATCTGGAACCACGGTTCAAGACGGTTCTGCTAAGATGCTAGTGACATCGGTCGGTATGAGGACCGAATGGGGAAGATTGATGGAAACTTTGAATGAAGGTGGTGATGATGAGACACCTCTTCAAGTGAAACTAAATGGTGTTGCTACACTTATTGGAAAAATAGGGTTAGGTTTTGCATTGTTAACATTTTTGGTTCTTACTGGTAGGTTTTTGTTGGTGAAAATATCTGAAAATAGTATCACTAAATGGTCTCTAAATGATGCATCTAAGCTTCTCAATTTCTTTGCAACTGCTGTTATTATAATAGTTGTGGCCGTTCCCGAGGGTTTGCCATTAGCAGTTACATTAAGCCTCGCGTTCGCAATGAAGAAATTAATGAATGATAAGGCGCTAGTTAGGCACTTATCTGCGTGTGAAACAATGGGATCTGCTGGTTGTATTTGCACTGATAAAACTGGAACTTTGACTACAAATCAAATGGTTGTCGACAAGATATGGATTTGCGAACAAACAAAGGCGATTAAAAGCAGCAATCGTGATGATAATGTATTAAAGAACTCGATTTCGGAGGAGAtatttcatctctttttgcagTCAATATTTCAGAATACTGCCTCAGAAGTTGTTAAAGGTGAAGATGGAAAGATCAAGGTCGTCGGTTCTCCAACAGAATCAGCATTGCttggatttggtttgattttagGAGGTGATTCTAAGTTTTACAATGATAAGTTTAAGATAGTTAAGGTTGAACCGTTCAATTCAACCCGAAAAAAGATGTCGGTTCTTGTTTCCTTTCCTGATAGCAATAACATAACTAGAGCATTTTGTAAAGGAGCATCCGAAATAGTGGTTAAAATGTGTGACAAAGTTGTTAATTCACAAGGTAAAGTTGTTTatttgaatgaaaataaaagaaatagcaTCAATGAAATTATTAATAGTTTTGCTTCCGAAGCACTAAGAACACTCTGCATAGCTTTTACGGATATTGAAGGAGGCTCTGATGGTAATAACACTATTCCTGAGGAAAAATATACTTTAATTGCTATTGTTGGGATCAAGGATCCAGTGAGACCTGGAGTTAAAGAAGCTGTTAAGACTTGTTTGGATGCTGGAATTACTGTTAGAATGGTAACCGGTGATAATATAAACACTGCTAAAGCTATAGCTAGAGAATGCGGTATTTTGACAGATGGATTGGCCATAGAAGGACCAGATTTTCGGAACAAGACTCAGCAAGAATTGGAACGGATCATACCTAAATTGCAGGTTGTAATGGCTAGATCTTTGCCACTTGATAAGCACACATTGGTGACCCATTTGAGGAAAGACTTTAACGAAGTTGTAGCAGTAACAGGAGATGGGACCAATGATGCTCCAGCTTTGCATGAAGCTGATATTGGATTTGCTATGGGTATTGCTGGAACGGAGGTTGCCAAAGAGAATGCAGATGTAATTGTAATGGATGATAACTTCACAACAATTGTGAATGTTACAAAATGGGGACGTTCTGTTTATATTAACATACAAAAGTTTGTCCAGTTCCAGTTAACCGTTAATGTTGTCGCTCTCTTGCTGAATTTTGTTTCAGCTTGTGTATCAGGTTCTGCTCCTCTTACTGCTGTTCAAATGCTTTGGGTAAACATGATTATGGACACATTAGGTGCATTGGCATTGGCTACAGAACCACCACATGATGGATTAATGAAGAGACCACCTATTGGAAGAAATGCAGAGTTCATCACTGGAGTTATGTGGAGGAATATCATTGGTCAAAGTATTTATCAAACTATTGTTCTTTTGGTTCTTAAATTTCGTGGAGAACAAATTCTTAAGCTCAATGGACCTGAGGCTACCACTATTCTTCATACTGTCATTTTCAACACCTTTGTGTTTTGCCAGGTATTCAACGAGGTAAACAGTCGAGACATGGAAAAGATAAATGTATTCCAAGGCCTATTCAGTAGCTGGATTTTTCTGATGGTAATCGCCGGAACAGTTTTTTTTCAAGTCATAATAGTTGAATTTCTTGGTACTTTTGCTCAAACAGTGCCACTTAGTCGCGACTTATGGTTAACAAGTGTGATGATCGGTGCTGTAAGTTTAGTAGTAGCTGTTGTCCTGAAGTGCATTCCTGTTCCTGTCAAGAATTACGTCGCGACGCATCATGATGGTTACGAGCGGCTCCCAACTGGACCAGAGTTAGCATGA | 3126 | 0.381 | MEKYLRENFFVQPKRPSEDALRRWRSAVSVVKNPRRRFRWVANLAQRADAEQKRKKLQEKIRVALYVQKAALHFITAGSRPTGKYMLSKETQEAGFGIEPDELASIIRSHDTKCLEQHEGVEGLAKAVRVSFKEGVNSSDIKHRQAIYGHNRHAEKPSRSFLMFVWDAMQDLTLNILILCSVVSIVVGILTEGFPKGMYDGVGIILCIILVVLVTSISDYKQSLQFKDLDKEKKNVSIHVTRDSRRQTVSIHDLVVGDIVHLAIGDIVPADGIFVSGFSLLIDESSLSGESEAVNVDQQKPFLLSGTTVQDGSAKMLVTSVGMRTEWGRLMETLNEGGDDETPLQVKLNGVATLIGKIGLGFALLTFLVLTGRFLLVKISENSITKWSLNDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNQMVVDKIWICEQTKAIKSSNRDDNVLKNSISEEIFHLFLQSIFQNTASEVVKGEDGKIKVVGSPTESALLGFGLILGGDSKFYNDKFKIVKVEPFNSTRKKMSVLVSFPDSNNITRAFCKGASEIVVKMCDKVVNSQGKVVYLNENKRNSINEIINSFASEALRTLCIAFTDIEGGSDGNNTIPEEKYTLIAIVGIKDPVRPGVKEAVKTCLDAGITVRMVTGDNINTAKAIARECGILTDGLAIEGPDFRNKTQQELERIIPKLQVVMARSLPLDKHTLVTHLRKDFNEVVAVTGDGTNDAPALHEADIGFAMGIAGTEVAKENADVIVMDDNFTTIVNVTKWGRSVYINIQKFVQFQLTVNVVALLLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGRNAEFITGVMWRNIIGQSIYQTIVLLVLKFRGEQILKLNGPEATTILHTVIFNTFVFCQVFNEVNSRDMEKINVFQGLFSSWIFLMVIAGTVFFQVIIVEFLGTFAQTVPLSRDLWLTSVMIGAVSLVVAVVLKCIPVPVKNYVATHHDGYERLPTGPELA | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu06g01037 | 1041 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 119 | 1018 | IPR023298 | - | |
| Tsu06g01037 | 1041 | Gene3D | - | 462 | 661 | IPR023299 | GO:0000166 | |
| Tsu06g01037 | 1041 | CDD | P-type_ATPase_Ca_PMCA-like | 143 | 890 | - | - | |
| Tsu06g01037 | 1041 | Gene3D | - | 135 | 335 | - | - | |
| Tsu06g01037 | 1041 | SUPERFAMILY | HAD-like | 451 | 862 | IPR036412 | - | |
| Tsu06g01037 | 1041 | Gene3D | - | 167 | 1016 | - | - | |
| Tsu06g01037 | 1041 | Gene3D | - | 449 | 802 | IPR023214 | - | |
| Tsu06g01037 | 1041 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 454 | 460 | IPR018303 | - | |
| Tsu06g01037 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 757 | 776 | - | - | |
| Tsu06g01037 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 676 | 686 | - | - | |
| Tsu06g01037 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 452 | 466 | - | - | |
| Tsu06g01037 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 781 | 793 | - | - | |
| Tsu06g01037 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 283 | 297 | - | - | |
| Tsu06g01037 | 1041 | PRINTS | P-type cation-transporting ATPase superfamily signature | 654 | 665 | - | - | |
| Tsu06g01037 | 1041 | SFLD | C1.7: P-type atpase like | 434 | 809 | - | - | |
| Tsu06g01037 | 1041 | Pfam | E1-E2 ATPase | 237 | 430 | - | - | |
| Tsu06g01037 | 1041 | Pfam | haloacid dehalogenase-like hydrolase | 450 | 771 | - | - | |
| Tsu06g01037 | 1041 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 6 | 48 | IPR024750 | GO:0005516 | |
| Tsu06g01037 | 1041 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 458 | 666 | IPR023299 | GO:0000166 | |
| Tsu06g01037 | 1041 | Pfam | Cation transporter/ATPase, N-terminus | 117 | 184 | IPR004014 | - | |
| Tsu06g01037 | 1041 | Gene3D | - | 16 | 76 | - | - | |
| Tsu06g01037 | 1041 | PANTHER | CATION TRANSPORTING ATPASE | 3 | 1025 | - | - | |
| Tsu06g01037 | 1041 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 111 | 1018 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Tsu06g01037 | 1041 | SMART | Cation_ATPase_N_a_2 | 115 | 189 | IPR004014 | - | |
| Tsu06g01037 | 1041 | Pfam | Cation transporting ATPase, C-terminus | 842 | 1015 | IPR006068 | - | |
| Tsu06g01037 | 1041 | PRINTS | H+-transporting ATPase (proton pump) signature | 789 | 814 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Tsu06g01037 | 1041 | PRINTS | H+-transporting ATPase (proton pump) signature | 613 | 631 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Tsu06g01037 | 1041 | PRINTS | H+-transporting ATPase (proton pump) signature | 757 | 773 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Tsu06g01037 | 1041 | SFLD | p-type atpase | 434 | 809 | IPR044492 | - | |
| Tsu06g01037 | 1041 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 1025 | - | - | |
| Tsu06g01037 | 1041 | SUPERFAMILY | Calcium ATPase, transduction domain A | 237 | 333 | IPR008250 | - | |
| Tsu06g01037 | 1041 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 550 | 702 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Tsu06g01037 | 1041 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 204 | 525 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Tsu06g01037 | 1041 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 730 | 845 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu06g01037 | Tsu-Chr6 | 9439987 | 9447603 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu06g01037 | 57 | 1038 | Primary Pumps ATPases | AT3G57330 | 69.074 | 0.0 | 1383 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu06g01037 | K01537 | - | gmx:100805063 | 1698.72 |