Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01030 ATGGTTGATATGCTAGGTTCATTTATCTCTGCTGTCTTGCAAGTTCTGTTGGATAGAATAGCTAATCCTGATCTCATAGACTTCTTTCGAGGAAACCATCTTGATGAGGCACTTCTAGAGAAGTTGAAGATGCTTTTGCTATCTGTCACTACAGTGCTTAATGATGCTGAGGAGAAACAGTTTGTTGATCCATTGGTGAAGGAATGGGTTGATAGGCTTAAGAGTGTTGCTTATGATGCTGATGATGTCTTGGATGAGATTGCCACCAAAGCCATACAAGACAAGATGGATCCTGGATTTCAGACAACCTTAAACCAGGTAAAAGATTATGCTTCTTCTCTCAATCCTTTTTCTGAAAGAGTTCAATCAAAAATTGGTAGGATAGTTGAGAGGTTGAAGTCTATATTAGAGCATAAAAATATTCTTGGTCTTAATGAAGGAGGTGTAGGTAAATCACTCTCGTTCGGTTCAGCTACGACTTCTTTGGTCGATGAACATCATGTGTATGGTAGACATGATGATAGAGAGAAGATTATTGACTTTTTGTTAGCAGGAGATTCCAATGGAGATGGGGTGCCGGTAGTTGCGGTTGTTGGGATGGGAGGGATAGGTAAGACTACTCTTGCTCAAATTTTGTACAATGACGAACGAGTGATAAACCATTTTCAATCTAGATCATGGGCATTTGTTTCAGATACTTCAAATGTGTATGAAATAACCAAAAAAGTTTTCGAGTCTTTTACTTTGTCACATTCTAATATCTCAGACTTGAATATACTCCAAATCAAACTTAAGCATAGATTGGCGAGACAAAGGTTTCTACTTGTTTTAGATGGGTTTCAAAATGAGAACTTTCTAGACTGGGACATCCTGCAAAGACCCTTTTTATCGGGAAACTATGGGAGTAGAATCATTGTCACCACACGTAGTCAAAGTGTTGCAACGTTGATTCGTGCTGATTTAACTCATTCCCTCTCGCTTTTATCTCATGATGATACTTGGAAGTTATTCGCAAGTCATGCATTCAAATCAGGGAACCCGAACGATGAGCATCCCATCTTGGCTCAAATAGGCCAAAAAATAGTGAAAAGGTGCAATGGTCTCCCTCTAGCCGCAAAAGCACTAGGGAGTCTCCTACGTACTAAAGTAGATCACGAGGAATGGAAATGTGTCTGTTATAGTAGGATATGGGAGTTACCAAGTGATAAGTGTAGCATTCTTCCTGCTTTAAGATTGAGTTATAGTCATCTACCTTCTCATTTAAAGCGATGTTTTACTTATTGTTCCATATTTCCGAAAGGCTTTGAAATACAAAAGCAGAACTTGATCTATTTATGGATGGCAGAAGGTATCCTACAAccacaaaaaacaaagaagagaaTGGAAGATGTAGGAGAAGAATGCTTTCAAGAGTTACTATCTAGGTCATTCTTTTATCGGTCAACATATCACATATCACATTATATGATGCATGACCTTATCCATGATGTAGCACAGTTTGTCGCAGGCGAATTCTATTACAACTTAGATGATAATAATCcaagaaaaataacaattagTGTTCGCCATTTATCTTATTTACAAGGCATATATGATGATCCTGAAAAGTTTGAGATCTTTTCTGAATTTAAGCAGCTTAGGACCTTCATACCATTCAAATTCTCATATTTTGTGTACTCTTCTTCAATTACTAGCATGGTTTCTATTTTGTTACCAAAATTGAAACGCTTGCGTGTGCTCTCTTTATCTCATTATCCAATTACAAAGTTGCCAGATTCAATTGGAAACTTGTTGCATTTGCGATATTTAGATCTTTCTTACACTGAAATTGAGTGTTTGCCTGATTCTATTAGCAGTTTGTATAATTTGGAGACATTGTTGTTGTCAAGTTGTCGTAGCCTAAATATGTTACCGGAAAACATGTCCAACCTTGTCAACTTGCGCCAACTTGATATTAGTGGAAGCAACGTGACACAAATGCCTGCaaaatttggtaaattgaagtCTCTTCAATTGTTGACAAGTTTTGTAATAGGCAACAAAAGGGGATCGAAAATCAGTGAGTTAGGGGAGCTTTCGAAACTCCATGGAGCACTTTTGATCGAGGGCCTGCAGAATGTTGTTGATCCAATAGAAGCCTCTCATGCCAGGttaaagagaaagaaatatCTTCGTGAACTAGAATTCAAGTGGACAACTATAACTCATGACCAAGAGAGTGAAACTAATGTCCTCGACATGCTAGAGCCGCATAAGAATGTGGAAAGacttaaaattcaaaatttcggTGGCAATAAATTGCCGAATTGGTTAGGGAGCACTTCATTCTCTAATATGGTGTTTCTACATCTTGCTAATTGTGAAAATTGCAAGTCACTACCATCACTTGGACAATTGTCTTCCCTCACAGAACTTTGTATATCAAAGATGAAAAGCCTACAAAAAGTTGGTCAAGAATTCTATGGAAATGTAATCGAGTCATTCAGActattgaaaattttgaagtttgaagaCATGCCGATTTGGGAAGAATGGTCAACCAACAGATTTGAAGAAAATGGACAATTCCCTTCGCTGCTTGAACTTTACATTGAGAGATGTCCTAAATTGACTAAAAATTTACCTGACCACCTTCCTTCCTTGGATAAGTTAGTGATAACTTCATGTCAAGCTCTCACAAATCCAATGCCACGGGTTCCACGGTTGAGAGAATTAGTGTTAACTGGTTGTGATGCATTATCGTCGTTATCTGAGAAAATGATGCAGGGAAATAAATGTCTTCAATTCATTGTCATAAGTAATTGCTCATCTCTCGTCACCATCTCCGTGGATAGTCTACCAAGTACGCTAAGATCTCTTGAAATCTATGAATGCAGAAATTTACAACTATTTCACTCTCAAAGTTCGATGCAACAATCTCATTGTTATTCCGCCCTTGAAAAACTACACTTAAAATGTAGTTGTGATTCTCTCATCTCGTTTCCGTTATTACTCTTTAACAAGCTCGAAGATCTACAGGTACAAGATTGTAGCAATCTCCAGTTTATTTCATCTGCTCCAAACAGTCTCCCACATTTTCGAAAGTTAAAACTAAAGCAATGCTCGAAACTGGCTCAGTTTCATGAAGTAGTGTTGCATGCTCCCAATCTTGAGTCACTTTCTATCAGCAAATGTGTTGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGATTTCTCATCTGAGATTTCATGGAGTCTTCAGACATTAACATCACTAACTTCTCTTCATATCAGTGGTCTTCCAAGTCTCACTTCATTGGAGCATACAGGAGTTCAGTACCTAACATCTCTCAAAAGTCTGAAGATTAAAGATTGTGCTAATCTTGGATCTCTTCCTTTAGACAAACTAGTTATCTCTCTTTCTCATCTTACTATTAGAGCATGTCCATTGTTAAAAGTGTTATGTGAAAAGGATATTGGACAATACTGGAGTATGGTTTCTCTCATACCTTTCAGAATCATTGAAGACTAG 3615 0.3538 MVDMLGSFISAVLQVLLDRIANPDLIDFFRGNHLDEALLEKLKMLLLSVTTVLNDAEEKQFVDPLVKEWVDRLKSVAYDADDVLDEIATKAIQDKMDPGFQTTLNQVKDYASSLNPFSERVQSKIGRIVERLKSILEHKNILGLNEGGVGKSLSFGSATTSLVDEHHVYGRHDDREKIIDFLLAGDSNGDGVPVVAVVGMGGIGKTTLAQILYNDERVINHFQSRSWAFVSDTSNVYEITKKVFESFTLSHSNISDLNILQIKLKHRLARQRFLLVLDGFQNENFLDWDILQRPFLSGNYGSRIIVTTRSQSVATLIRADLTHSLSLLSHDDTWKLFASHAFKSGNPNDEHPILAQIGQKIVKRCNGLPLAAKALGSLLRTKVDHEEWKCVCYSRIWELPSDKCSILPALRLSYSHLPSHLKRCFTYCSIFPKGFEIQKQNLIYLWMAEGILQPQKTKKRMEDVGEECFQELLSRSFFYRSTYHISHYMMHDLIHDVAQFVAGEFYYNLDDNNPRKITISVRHLSYLQGIYDDPEKFEIFSEFKQLRTFIPFKFSYFVYSSSITSMVSILLPKLKRLRVLSLSHYPITKLPDSIGNLLHLRYLDLSYTEIECLPDSISSLYNLETLLLSSCRSLNMLPENMSNLVNLRQLDISGSNVTQMPAKFGKLKSLQLLTSFVIGNKRGSKISELGELSKLHGALLIEGLQNVVDPIEASHARLKRKKYLRELEFKWTTITHDQESETNVLDMLEPHKNVERLKIQNFGGNKLPNWLGSTSFSNMVFLHLANCENCKSLPSLGQLSSLTELCISKMKSLQKVGQEFYGNVIESFRLLKILKFEDMPIWEEWSTNRFEENGQFPSLLELYIERCPKLTKNLPDHLPSLDKLVITSCQALTNPMPRVPRLRELVLTGCDALSSLSEKMMQGNKCLQFIVISNCSSLVTISVDSLPSTLRSLEIYECRNLQLFHSQSSMQQSHCYSALEKLHLKCSCDSLISFPLLLFNKLEDLQVQDCSNLQFISSAPNSLPHFRKLKLKQCSKLAQFHEVVLHAPNLESLSISKCVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDFSSEISWSLQTLTSLTSLHISGLPSLTSLEHTGVQYLTSLKSLKIKDCANLGSLPLDKLVISLSHLTIRACPLLKVLCEKDIGQYWSMVSLIPFRIIED 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01030 1204 Gene3D - 155 322 IPR027417 -
Tsu06g01030 1204 SMART LRR_typ_2 644 667 IPR003591 -
Tsu06g01030 1204 SMART LRR_typ_2 597 620 IPR003591 -
Tsu06g01030 1204 SMART LRR_typ_2 574 596 IPR003591 -
Tsu06g01030 1204 Gene3D Ribonuclease Inhibitor 898 1063 IPR032675 -
Tsu06g01030 1204 Pfam NB-ARC domain 173 392 IPR002182 GO:0043531
Tsu06g01030 1204 Pfam Leucine rich repeat 576 632 IPR001611 GO:0005515
Tsu06g01030 1204 SUPERFAMILY RNI-like 855 1179 - -
Tsu06g01030 1204 Coils Coil 1059 1060 - -
Tsu06g01030 1204 CDD RX-CC_like 53 135 IPR038005 -
Tsu06g01030 1204 Gene3D - 33 133 - -
Tsu06g01030 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 428 IPR027417 -
Tsu06g01030 1204 PANTHER DISEASE RESISTANCE PROTEIN RP 53 938 IPR044974 GO:0006952
Tsu06g01030 1204 PRINTS Disease resistance protein signature 267 281 - -
Tsu06g01030 1204 PRINTS Disease resistance protein signature 365 379 - -
Tsu06g01030 1204 PRINTS Disease resistance protein signature 194 209 - -
Tsu06g01030 1204 PRINTS Disease resistance protein signature 618 634 - -
Tsu06g01030 1204 SUPERFAMILY L domain-like 490 892 - -
Tsu06g01030 1204 Gene3D - 413 500 IPR036388 -
Tsu06g01030 1204 PANTHER - 53 938 - -
Tsu06g01030 1204 Gene3D - 327 412 IPR042197 -
Tsu06g01030 1204 Pfam Rx N-terminal domain 8 98 IPR041118 -
Tsu06g01030 1204 Gene3D Ribonuclease Inhibitor 1104 1189 IPR032675 -
Tsu06g01030 1204 Gene3D Ribonuclease Inhibitor 708 894 IPR032675 -
Tsu06g01030 1204 Gene3D Ribonuclease Inhibitor 558 707 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01030 Tsu-Chr6 9380101 9383721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01030 195 710 WRKY Transcription Factor Family AT5G45050 23.363 1.12e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01030 - - cam:101492735 1810.81