Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01024 ATGACTGAGCCTCACCCCACCTCAACTGCTTCCAAGCAACCGAGCACCGCCACTACTACTAATGATCAAGGGAAAATACATCAGATCGAGATACAGAACTTCAAATCGTACAAAGGTTTCCAAGCAATCGGTCCTTTCTCCGACTTCACAGCTATCATTGGTCCTAATGGCGCCGGAAAATCCAACTTAATGGATGCCATTAGTTTTGTCCTCGGCGTTAGAACCATTCACCTCCGTGGTTCGCAGCTGAAGGATCTTATCTACACATTTGATGGTAGAGATAAGGAGAAGAATGAACGCAGTGCCTTCGTTCGATTGGTTTATCAAATGGCCAATATTGAGATTAAGTTTACAAGAAACATTACTGCCACCGGTGCAAGTGAGTATCGCATTGACGGAAACTTTGTTACCTGGAATGACTATAATGCCAAACTCAAATCACTTGGCATTCTTGTCAATGCGCGCAATTTCTTGGTCTTTCAGGGTGATGTTGAATCCGTTGCATTGAAAAATCCGAAGGAACTTACTATCCTCATCGAGCAGATATCTGGCTCGGACGAATTCAAGAGAGATTACGAGaagtttgaagaagaaaaagcttCTGCTGAGGAAAAATCAGCACTTGTTTATCAGAAGATGAAGTACATTGTTATGGAGAAAAAGCAGaagaaagaacaaaagaaagagGCAGAGAAATATCTCTGTCTGCAAGACCAATTGAATTCTTTGAAGAAAGAACTTTTCTTGTGGAAGTTGTTCGATATAGAAAATGATATTGTTAAAACAACTGAGGAACTTGTGGAAGTAAAAAAGTTTAAACACGAAGccgagaaaaagaaagaagagcaAGCCAAATATCTTGAGGAGATTGTGCAACTTGAGGAGAAAATAATTGAGAAAAGCAACACACTTCACGAGACTCTAGTAGCCGAGCTTATCAAGTTAAAGGAGGAAATGTCGCttatcaattataaaattggAAAACGGAAGAACGAGCTTGGCAAAAAAAGGGAAGAACGAAGGAGACATGCTGATGATATCGCAATGCTGCAGAATGGAATTAAGGATCTTACAGCGAAAATGAAAGACCTTGAGGAAAAGGGTCGAAATGTTGGTGGTCAGATTAAGTTAGATAGCAATGACTTGGAAGAATATTTTAGAATAAAAGCGGAAGTTGGGATGAAAACCGCAAATcttagagaagaaaaagaactTCTTGATAGGCTGCAACATGCTGATATTGAATCTCAAAATTATTTGGaagaaaatcatcaacaattagAAAACCGGTATTCTGAGCTGGATTCGAAGGAAAAACAGATGCGAGAAAGGAAAAACAAAGTGTCGGAACTTGAAAATGCCCTTgagaatttgaagatgaaagaaCTGCCTGTGATGAAGGGAAAACAAAGTGATTTCGAGAGAAAATATGCTGACTTGAAGAGACAAATTGATGATGTAGAAAATGAACTACATGAATTGAAGGCCGATAGATATGAAAATGAGAGAGATGCTAGATTGTCTGATGCTGTAGCAAACCTGAAATGCTTGTTTCAAGGAGTCCATGGTCGCATGACTGATCTTTGTAGACCAACACAGAAGAAGTATAACCTAGCCGTTACTGTTGCTATGGGTAAATTAATGGATGCCGTTGTTGTTGAGGATGAAAAAACTGCGAAGGAATGCATCAGTTATTTAAAACAGACGAAGCTTCCTCCCCAGACATTTATTCCTCTAAAATCTATCCGTGTGAAGCAAATAATTGAAAGATTACGCTCGTTAGGGGGTGCAACAAAACTTGTTTTTGATGTGATTCAATTTGATCCTTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAACACTCTTGTTTGTGAAGATCTGGAGAGGGCCAAAATTTTAAGCTGGAGTGGCGAGAGGCTTAAAGTTGTAACTGTGGACGGAATTCTGCTGACGAAATCCGGCACAATGACTGGTGGCACTAGTGATGGGATGGAAGCAAGATCAAAAAAGTGGGATgccaagaaatttgaagattcTGTTAAGAAGAAAGAGCGGTTTGAATTGGAGTTGAAGGAGGTAGGTTCGATTAGAGATGTGCACCGTATTGAAGTGTCTGATGCAGAGGGAAAAATTAGCGAACTACAGAAGGAAATTCTATATGCTGAGATTGAAAAGCAAAGCATTGAAGAAAAGCTTTTAGAATTGAGCGGCGAAAAGGAgaccataaaaaaaacaattgaacgTATTAGTCCAGAACTGAACAGGTTAAGAGATGCTGTTGAAAAGAGGAATACTAAAATACGCAAGCTTGAGACGAGTATAAATGAAATTACTGATGGGATGTACAGAGACTTCAGCAAGTCAGTCGGCGTTGCAAATATTTGCGACTATGAAGAGAATCGACTCAAGACTGCTCAAAATGTAGCAGAGGAGAAGCTGAAACTTAATAGCCAACTTCCGAAATTAAGAAATCAGTTGAAGTATGAGGAAAACCGGGACATGAGTTCACGAATTCAAGAATTGGAATATTCCGTGAGTGCTTTAAAGAATGATTTAAAACTGGTACAGAACAAAGAGGCTGAAGCAAAGTTAGCAGCGGAAATTGCTACGGAAGATATCAATCAGTTGAAGAATGAAGCTATAGAGTTGAAATCAAAGTCAAAGGATTGTGAAAAGGAAATCCATAAATGGACGGAGAAGGCTTCTGCAGCATCATCAAAAGAGGCACAGAATAAGCAGTTAATGGAGCAAAAACATGAAATATTACAGAAGTGTGAACTTGAGCAGATTAGCCTTCCAACCATATCAGATCCTATGGATACCGGTAGCTCAACAATAGGTCCAGTTTTTGACTTTGGTAAGCTCAGTGGGAGACTAAAAAATAGGAGTCACTCTGACAAGGATATAATAGAGGCAGAATTTAAGCAAAAAATGGATGCATTGATGTCTGATATCAAAAGAACAACACCAAATTTGAAGGCATTAGACCAATATGAGGCTTTGGTTGAAAAAGAAAGAGCTGTAACTGAAGAGTTTAAAGCTATCAGGGAAGAAGCGAATGAAAAAATGGTTGAATTCAAAGAAGTTAAGAAGAAGAGATATAATTTGTTCATGGATGCTTTCGAAAATATATCTGGTAATATAGACAAAACTTACAAACAACTTACAACGAGTAACATACATCCTCATGGTGGACAAGCATACCTGCATTTGGAAAATGAAGACGATCCATTTCTACATGGAATCAGGTACAGTGCTATGCCTCCAGCACAACGGTACCGCGACATGGAAGTACTATCTGGTGGTGAAAAGACTGTTGCGACGCTTGCATTGCTATTCTCCATTCATAGATACAAACCTTCGCCATTTTTCATACTGGATGAAGTTGATGCTGCATTAGATAATTTGAATGTTGCCAACGTTGCTGGCTTTATTCGTTCAAAATCTTGTCAAGGAGTGAGGGCTAATCAGGAAGCTGATGGTGGAAGTGGTtttcaaataattcaaatatcaCAGAAAGACAGTATCTACAACAAAGCTGAAGTGTTAGTTGGGGTTTATAGGGACTCTGAACAAGGCTGTTCGAGAACTCTCACATTTGATCTGACTAAATATCGAGAGTCCTAA 3630 0.3749 MTEPHPTSTASKQPSTATTTNDQGKIHQIEIQNFKSYKGFQAIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTIHLRGSQLKDLIYTFDGRDKEKNERSAFVRLVYQMANIEIKFTRNITATGASEYRIDGNFVTWNDYNAKLKSLGILVNARNFLVFQGDVESVALKNPKELTILIEQISGSDEFKRDYEKFEEEKASAEEKSALVYQKMKYIVMEKKQKKEQKKEAEKYLCLQDQLNSLKKELFLWKLFDIENDIVKTTEELVEVKKFKHEAEKKKEEQAKYLEEIVQLEEKIIEKSNTLHETLVAELIKLKEEMSLINYKIGKRKNELGKKREERRRHADDIAMLQNGIKDLTAKMKDLEEKGRNVGGQIKLDSNDLEEYFRIKAEVGMKTANLREEKELLDRLQHADIESQNYLEENHQQLENRYSELDSKEKQMRERKNKVSELENALENLKMKELPVMKGKQSDFERKYADLKRQIDDVENELHELKADRYENERDARLSDAVANLKCLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTAKECISYLKQTKLPPQTFIPLKSIRVKQIIERLRSLGGATKLVFDVIQFDPSLEKAILFAVGNTLVCEDLERAKILSWSGERLKVVTVDGILLTKSGTMTGGTSDGMEARSKKWDAKKFEDSVKKKERFELELKEVGSIRDVHRIEVSDAEGKISELQKEILYAEIEKQSIEEKLLELSGEKETIKKTIERISPELNRLRDAVEKRNTKIRKLETSINEITDGMYRDFSKSVGVANICDYEENRLKTAQNVAEEKLKLNSQLPKLRNQLKYEENRDMSSRIQELEYSVSALKNDLKLVQNKEAEAKLAAEIATEDINQLKNEAIELKSKSKDCEKEIHKWTEKASAASSKEAQNKQLMEQKHEILQKCELEQISLPTISDPMDTGSSTIGPVFDFGKLSGRLKNRSHSDKDIIEAEFKQKMDALMSDIKRTTPNLKALDQYEALVEKERAVTEEFKAIREEANEKMVEFKEVKKKRYNLFMDAFENISGNIDKTYKQLTTSNIHPHGGQAYLHLENEDDPFLHGIRYSAMPPAQRYRDMEVLSGGEKTVATLALLFSIHRYKPSPFFILDEVDAALDNLNVANVAGFIRSKSCQGVRANQEADGGSGFQIIQISQKDSIYNKAEVLVGVYRDSEQGCSRTLTFDLTKYRES 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01024 1209 Coils Coil 698 746 - -
Tsu06g01024 1209 Coils Coil 185 212 - -
Tsu06g01024 1209 Gene3D - 1030 1209 IPR027417 -
Tsu06g01024 1209 Coils Coil 269 318 - -
Tsu06g01024 1209 Coils Coil 226 246 - -
Tsu06g01024 1209 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 25 1208 - -
Tsu06g01024 1209 Gene3D - 24 228 IPR027417 -
Tsu06g01024 1209 SMART SMC_hinge_2 519 635 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu06g01024 1209 SUPERFAMILY Smc hinge domain 480 682 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu06g01024 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 1195 IPR027417 -
Tsu06g01024 1209 PIRSF SMC 23 1207 IPR024704 GO:0005524|GO:0016887
Tsu06g01024 1209 CDD ABC_SMC1_euk 26 172 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Tsu06g01024 1209 Coils Coil 754 774 - -
Tsu06g01024 1209 Gene3D - 479 587 - -
Tsu06g01024 1209 Coils Coil 470 504 - -
Tsu06g01024 1209 Pfam RecF/RecN/SMC N terminal domain 26 1191 IPR003395 -
Tsu06g01024 1209 Coils Coil 347 367 - -
Tsu06g01024 1209 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 25 1208 - -
Tsu06g01024 1209 Coils Coil 417 461 - -
Tsu06g01024 1209 MobiDBLite consensus disorder prediction 1 24 - -
Tsu06g01024 1209 Coils Coil 832 894 - -
Tsu06g01024 1209 Pfam SMC proteins Flexible Hinge Domain 519 634 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu06g01024 1209 Coils Coil 806 826 - -
Tsu06g01024 1209 Gene3D - 588 662 - -
Tsu06g01024 1209 Coils Coil 905 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01024 Tsu-Chr6 9305078 9309283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01024 11 287 Structural Maintenance of Chromosomes family AT5G15920 27.336 2.47e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01024 K06636 - gmx:100785315 1543.87