Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01017 ATGGGTTACCTCAATCTTTCTTGCAAAGCTCAATCATCAATCTCAACCTCAAATTCTctatcttcatcatcatcatcatcatcaaaaccaaacaaagacaaagacaaagaaaaaaccATCAAGATCCAACAGTTTCAATACACTGATCTTGAAGCAGCAACAAACaatttctcaaacaacaaactTCTTGGTAAAGGTAGTCATGGTTATGTCTACAAAGCAATTGTTCATGGTAAACCTGTAGCTGTAAAAAGACCATCTAGACCTCAATCTCTTAGACccatctcatcatcatcatcttcacatGAAATTACTAATGAAGTTGATAACGAAATCGATATTTTATCGAAAATTCAAAGTCCCAGGTTGGTTAATCTTGTTGGTTTTACAAATGATTCAAAAGATAGACTTTTGGTTGTTGAGTTTATGTGTAATGGTACTCTttttgatgttcttcattcttCTTCAAGAACCCTTAATTGGGGTAGAAGAATTCGTTTAGCTTTACAAACTGCTAAAGCTATTGATATACTTCATTCATCAAATCCACCTGTTATTCATAGAGATATTAAATCTGCTAATGTTcttattgatcaaaattataATGCTAGATTAGGTGATTTTGGTTTAGCATTAATGGGTTTTGATAGGGTAAGGTCAACTCCACCAGCTGGTACTATGGGTTATCTTGATCCTTTTTATGTAACTCCTGATAATTTGAGTACTAAAATTGATGTTTTTAGTTTTGGGATTTTGTTGTTGGAGATTATAAGTGGTAGGAAAGCAATTGATGTTGCTTATTCGCCGCCGTCTGTTGTTGATTGGGCTATTCCACTTATTAAGAAAGGGAAGATTTTTGCTGTTTTTGATCCTAGAATACCACCTCCTAAGGATGCTTTTGTTAGGAAACAATTGGCTTTGATTGCGGCGAAATGTGTTAGGTCTTGTAGAGAGAGAAGGCCTTCGATGAATGAGGTTGTTAATTGGCTTTGTGGGTTGTGTAAATTGGTTCCGAATCATTCGTGGAATggttttaatattaatattaataacccTTGTATGATGGTTGAAAATGTTGGACGTCCAGTTGAACCGAGAAATGGACGGTTAGGTAGTTCGAGGTTTGCGGAAGAAGGGAATTTTGGTGGTTTGGATGCTAGATTGTCGAAGTCTGCATTGAGATATTCGAGGAGAGTGTATTCGGATTTAGGGTTTAGCAGTAATTTGATGGATCTTATGGCTACGACTGAGGAGGCAGAATTTATACAAGATGCTGATGGTGTTGTTCAACCTAGTCCTAAATCAGTTGAACAAGTTTCTAGTTCTAGATTTGGCAGTGGAAGATATTTTGCGAGAGGAAAAAATCTATATAGGCCTTGTGGTACTGATAAAGATGCTTTTGGATTGAGTAAAGGCCAGATTGTTGGCGAGAAttcttcaaatttaaaacaGGATGAGGTTTCTGCATCAACTTTAACTTCTCTTTCAACTGAGGCTATCTAG 1503 0.3273 MGYLNLSCKAQSSISTSNSLSSSSSSSSKPNKDKDKEKTIKIQQFQYTDLEAATNNFSNNKLLGKGSHGYVYKAIVHGKPVAVKRPSRPQSLRPISSSSSSHEITNEVDNEIDILSKIQSPRLVNLVGFTNDSKDRLLVVEFMCNGTLFDVLHSSSRTLNWGRRIRLALQTAKAIDILHSSNPPVIHRDIKSANVLIDQNYNARLGDFGLALMGFDRVRSTPPAGTMGYLDPFYVTPDNLSTKIDVFSFGILLLEIISGRKAIDVAYSPPSVVDWAIPLIKKGKIFAVFDPRIPPPKDAFVRKQLALIAAKCVRSCRERRPSMNEVVNWLCGLCKLVPNHSWNGFNININNPCMMVENVGRPVEPRNGRLGSSRFAEEGNFGGLDARLSKSALRYSRRVYSDLGFSSNLMDLMATTEEAEFIQDADGVVQPSPKSVEQVSSSRFGSGRYFARGKNLYRPCGTDKDAFGLSKGQIVGENSSNLKQDEVSASTLTSLSTEAI 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01017 500 ProSitePatterns Protein kinases ATP-binding region signature. 63 84 IPR017441 GO:0005524
Tsu06g01017 500 ProSiteProfiles Protein kinase domain profile. 57 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01017 500 Coils Coil 492 500 - -
Tsu06g01017 500 MobiDBLite consensus disorder prediction 83 103 - -
Tsu06g01017 500 Gene3D Phosphorylase Kinase; domain 1 27 142 - -
Tsu06g01017 500 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN 1 483 - -
Tsu06g01017 500 PANTHER OS01G0750732 PROTEIN 1 483 - -
Tsu06g01017 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Tsu06g01017 500 SMART serkin_6 57 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01017 500 MobiDBLite consensus disorder prediction 1 38 - -
Tsu06g01017 500 MobiDBLite consensus disorder prediction 1 28 - -
Tsu06g01017 500 Gene3D Transferase(Phosphotransferase) domain 1 143 342 - -
Tsu06g01017 500 Pfam Protein kinase domain 58 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g01017 500 SUPERFAMILY Protein kinase-like (PK-like) 40 346 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01017 Tsu-Chr6 9255757 9257888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01017 5 330 Receptor kinase-like Gene Family AT3G59420 40.597 3.29e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Tsu06g01017 Pkinase 7.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01017 - - gmx:100805692 678.707