Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01013 atggGTAGGGGAAAAATTGAGATTAAAAGGATTGAAAACGCTAATAGTAGACAAGTTACATTTTCTAAGAGAAGAACTGGGTTGTTGAAAAAGGCTCAAGAGCTAGCTATTCTTTGTGATGCTGAGGTTGCtgttatcattttttcaaacaCAGGGAAGCTTTTCGAGTTTTCAAGTTCTGGTATGAAGCGAACACTTTCAAGATACAACAAATGCACGGATTCTTCAGAGAGTGCGTCAGTAGAATATAAAACAGAGAAGGATGATACTAAGATGGTGGAGATTCTTAAAGATGAAATTGCAAAGCTAGAAACAAATCAATTACGGCTATTAGGAAAGGACTTAACAGGATTGGGATTAAAGGAACTGCAACATCTAGAGCAGCAAATTAATGAGGGACTATCATCCGTGAAGGAGAGGAAGGAGGAATTGCTTATGGAACAACTGGAGCAGTCCAGAATACAGGTTGAGGAGCTTCGATGCTTGTTTCCAATAACAGAACATGTAATGCCAACTTATCTTCAGTATCACCATGTCGAAAGAAAGAATTCATTTGTAGATAACAGTGTTAAATGTCCCAACTTCGCCAGAAATTGCGCAAACGACAAAGCTGATTCAGACACCACATTGCATCTAGGACTACCAACTGATGTTCATCCCAAGAAGACTCCTGAGAAAAAAACTTTTTCTAATGATTCATAG 702 0.3746 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSESASVEYKTEKDDTKMVEILKDEIAKLETNQLRLLGKDLTGLGLKELQHLEQQINEGLSSVKERKEELLMEQLEQSRIQVEELRCLFPITEHVMPTYLQYHHVERKNSFVDNSVKCPNFARNCANDKADSDTTLHLGLPTDVHPKKTPEKKTFSNDS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01013 233 MobiDBLite consensus disorder prediction 211 233 - -
Tsu06g01013 233 ProSiteProfiles K-box domain profile. 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu06g01013 233 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Tsu06g01013 233 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Tsu06g01013 233 Coils Coil 123 143 - -
Tsu06g01013 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu06g01013 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu06g01013 233 PANTHER MADS BOX PROTEIN 1 218 - -
Tsu06g01013 233 MobiDBLite consensus disorder prediction 218 233 - -
Tsu06g01013 233 Pfam K-box region 91 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu06g01013 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tsu06g01013 233 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Tsu06g01013 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu06g01013 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu06g01013 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu06g01013 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu06g01013 233 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01013 Tsu-Chr6 9170401 9173760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01013 1 233 MADS-box Gene Family AT5G13790 50.602 7.37e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu06g01013 K-box 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01013 - - rcu:8259342 320.472