Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01011 ATGAGCAAAACAATTAGTACTTCTCTTCTTATatcttttctcattttttcaCACTTTGTGATTGAAATTCATGGAAACAAACAAGTTAAAGCTCTTGACAATCttcacaaagaaaaatatagagTAAATTCACAAATTGATAAGAGTGGATTTGAGGTACAAGATATTGTGTATGAAGAAGCTATTGTTCATTCTCAAGAAGGACTTAAAGAGAAAGATAGGATTAAGAGACTTCCAGGGCAACCCTTTGTGAAATTCTCTCAATTTGGAGGGTATGTCACATTGGATAAGTCTGCTGGTAGTGCCTTTTATTATTACTTCGTTGAAGCTCAACAATCTAAAGAAAcacttcctcttcttctttggCTCAATGgaggTCCCGGATGTTCATCTCTGGCCTATGGAGCAATGCAAGAATTGGGACCTTTTAGAGTAAACAGTGATGGCAAAACATTACACCAAAATAGATTCTCATGGAACCATgCTGCAAATGTTTTGTTTGTGGAGTCACCTGTTGGAGTAGGATTTTCTTATTCAAATAGATCAGAAGATTATAATATCAATGGAGACAAGAGAACAGCTAcacttaactatttatttttggtaaattgGTTGGAAAGATTTCcagaatataaaaatagagaTTTCTATATTTCTGGAGAAAGTTATGCTGGACATTATGTTCCTCAACTTGCACATACCATTCTCTATCATAACAAAAAGGCAAAGACAATCATTAACCTCAAAGGAATCTTGATAGGAAATGCAGTAATCAATGATGATACAGACTCACAAGGAATGTATGATTTTCTTGCAAGTCATGCTATCATCTCAGACCATGCAGCAAATgttatcaacaaaaatatttgtgattTCTCATCAGATAATCTCACAAATGAATGCAATGCAGTTGTTGATGAAGTTGGTTTGGATCTTGCATTCATTGATTTATATAACATTTATGCTCCAGTATGCAAAAATGAAAATCTCACATCCAAGCCCAATAAGTACACTgaTGTGAATGATCCATGTGGTGAGTTTTATGTGTTTGGTTATCTTAATAGAGAAGATGTTCAAAAAGCACTTCATGCTAATGTCACAAAACTCAAATATGAATGGAGTCCTTGCAGTAGTGTCATTAGACACTGGCTTGATAGCTCTTCAACAGTCCTTCCTCTTTTACATGAATTTCTCAATAATGGCTTAAGGGTTTGGATTTTCAGTGGTGATACTGATGGAAGGGTTCCTGTGACTTCAACTAAGAATTCAATTAAGAAGATGAACCTTCCTGTTAAAAATATTTGGCACCCTTGGTTTTCCTATGGAGAGGTTGGTGGCTATACAGAAGTATACAAGGGAGACCTAACATTTGCTACAGTGAGAGAAGCAGGACATCAAGTGCCAAGTTACCAACCAGCAAGAGCTCTTACTTTGATTAAACATTTCTTAGATGGCACTCCTCTTCCTACTCCTAAATTAAAAAACTAG 1488 0.3286 MSKTISTSLLISFLIFSHFVIEIHGNKQVKALDNLHKEKYRVNSQIDKSGFEVQDIVYEEAIVHSQEGLKEKDRIKRLPGQPFVKFSQFGGYVTLDKSAGSAFYYYFVEAQQSKETLPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLHQNRFSWNHAANVLFVESPVGVGFSYSNRSEDYNINGDKRTATLNYLFLVNWLERFPEYKNRDFYISGESYAGHYVPQLAHTILYHNKKAKTIINLKGILIGNAVINDDTDSQGMYDFLASHAIISDHAANVINKNICDFSSDNLTNECNAVVDEVGLDLAFIDLYNIYAPVCKNENLTSKPNKYTDVNDPCGEFYVFGYLNREDVQKALHANVTKLKYEWSPCSSVIRHWLDSSSTVLPLLHEFLNNGLRVWIFSGDTDGRVPVTSTKNSIKKMNLPVKNIWHPWFSYGEVGGYTEVYKGDLTFATVREAGHQVPSYQPARALTLIKHFLDGTPLPTPKLKN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01011 495 Gene3D alpha/beta hydrolase 69 327 IPR029058 -
Tsu06g01011 495 Pfam Serine carboxypeptidase 80 485 IPR001563 GO:0004185|GO:0006508
Tsu06g01011 495 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Tsu06g01011 495 Gene3D - 390 485 - -
Tsu06g01011 495 SUPERFAMILY alpha/beta-Hydrolases 71 489 IPR029058 -
Tsu06g01011 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 489 IPR001563 GO:0004185|GO:0006508
Tsu06g01011 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 455 468 IPR001563 GO:0004185|GO:0006508
Tsu06g01011 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Tsu06g01011 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Tsu06g01011 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Tsu06g01011 495 Gene3D - 344 380 - -
Tsu06g01011 495 PANTHER CARBOXYPEPTIDASE 10 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01011 Tsu-Chr6 9149520 9154288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01011 352 488 Calmodulin-binding Proteins AT2G22960 32.117 2.71e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01011 K16297 - gmx:100783864 746.117