Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00972 ATGAAGAGATTGCGTTCAACCGAAGATCTTCACTCTTATGGTGAAAAGAATGGTGCTGATAAGAATTCAAATCTTTCTGTTAaggattcaaactcaaattcaaatCCAAATCTGAACCGTTCGTTTTCTTCTACTGGTCAAAGAAGTTTTTACTATAAACAAGAGAATGTGAGGAAGAATTTGATATCTTCGTCGTCGTCTTCGTCGCGATTCGATAGGGATAGAGATAGGGATCGAACGGTGGAGGAAGATCGAGAAGGTTCTAGAATTGTTCGTAAGCGATCTGAACATGATTTTGATGGTTTTGATCGGAGGAAAGGTTTTGATCGGTATAGCAGGGATGGTGGTGGTTACAGTGGAGGTGGAGATAGAGATAGAGATAGAGATAGGAATTCGATTCATAGGTCGGAGAGTTTTTGTGGAGGTTCGAGGAGGGAGTTTCCGAAGGGTTTTCGATCGGAGAGGGATCGGTCGAGGAGGGAAGGGAGTGTTTCGTCGTGGAGGAGAGGTTTGAAGGATTTTGATGAGAGTAGTAGAGGGGGAAATAGTAGGGTTGAAGAGAGAATTGTGAGGTCGCCGAAGGGTTTTTCGAGGGATGTGAAATCACCTAGTTGGTCTAAGGATTCGGAGAGTGAACAATCGAAGAAGAGATCTTCGGAGTCTCCGAGGGTGTTTAGAGAGGCTACTAAGTCGATATCAAAATCGCCTTCTTGGTCGAAGGATTCGGAGAAGAGCGAGCAATCGAAGAGTGTTAGTGTTGAGGTGAAGAAAAGTGATGAGTTGTTGCAACAGGTCCAGAGTGGTAGTGGTAGTGAAATGGAAGAGGGGGAGCTTGTACCTGAACCTGTCGCTAAAACTGAGGCCGAAGCAGCTTATAAAGATGCTGCAGCTGGAACGGAAAGCCTGCAAGGCTCCAAGGATGAACAAATGCATAAAAAGAATGAATTTGGTTCGAGTGATGCAGATGTTGTTATGGAAGAAAAACAGATGTTGTCGGGTGAGAAAGAGGCGAAACCTATGGAGGATGTTGATTCTGAGGTTAAAGATGCAGGGAAGGAAATTCATGAATTGTCTAAGAATCAAGATAAATCTACTAAGGAAATTGCTGTTACTAAGGCTGAGATTAGAACTGTTAATAATGATGTTAAGAAGGATGTGTGTTTGAATGGTGATAATACTCGGCACAAGGAGGAGGAGACGGAGAAGGGGGAAAATACGGAGAAGGCATTGCTTAATGAAGAGGAGCATGAGGTGGACAAGGGTGTAGGTGGTGATAAACTTGACGGAAATGATGAAGGCTCAACAGAGAATGCAGTTGGTGATGAATTGAAGGAAGAAGCGATGATGGAGAGTGTGACAACTAATGTGAAGGATAAAGGCAAAAGCATTTCGGTCGCACCTGATGTTGCTCATGCTTCAGAAGATGGCCTGTGGATTGATAGAGGGTCGAAAGATCTCACAACATGCTCTTCAGATGTCATGGAAGGTCCAAGCACAAGAGGATTTGAACTTTTCTCTAGATCTCCAGTGAGAAAAGTAGAAAAGTCTGATAGTTCGGTTCTCAAAAAGGAGAATGATGACAGTCTTGCAATGGGGCAGCTTGATCTTACTCTTAGCTTGCCGAATGTTCTGTTACCGATTGGTGCTCAGGAGACGGCGTCGCAAGCCCCTGGTTCTCCTAGTCAAGCACTGAGTGTTCAGTCTCTAAGTAATACATTTTGCACTAACTCAGATGGTTTTACTGCATCAATGTCATTTTCAGGTTCACAGTCACTATATCACAATCCAAGTTGTTCGCTAACGAAAAATTCTATTGACTATGAACAATCTGTTGGCAAATCGGTTGGTAGTCGCCCCTTGTTCCAGGGATTTGATTGGCAAGCCCTATCTCAGGCTGAACCCAAGCAGAAAGAAGTTCCCTCTGGTCAGAGAACTTCGATGAATGGGAACGGCTCACTTTACCAGCCTCAAGCATCGTGGGGAGTTTTAGATACTCAAGCTTTGAAAAGTCAACATTCTAGGCCTCTAGAAGGAAGCTCAAAAATGGGAAATGGGTTTGAAAGGCAATTGAGTTTTCATAAGCAGCTTTCTGGACAGTCAAGACAACATGATGATGTTCGATCTCCTACACAGAGTGTTGGGTCACATGACAATGGATCAAATTATAGTTTTGAGAAAAAGAAGGAGGTTAGGGAAAGAAGTAGCAGCAGTCTACATCGATCAACTAGCCAGAAGGGACAAGATCATTTTCTGATGGGTGGACTTGATTTTGTTAAGACAATCGTTGCAAGAATAGTTTCTGAACCTGTGCAAGCAATGTCCAGAAAGTTCCATGAAATGAATGGACAATACATAACGCGTATGAAAGAGGGTATTCGAGAACTCATGGTCAATGCTGATAACCAGGGAGAGATACTtgcttttcaaaatattttgcaGAACAAGTCTGACATAACCTATGATGTCCTAGTGAAGTGTCACCAAGCGCAACTGGAAATTTTGGTTGCATTAAAAACTGGTGTTGTCAATTATCTTCACCTAGATGATAACATTTCATCTTCTGATTTAGCTCAAGTTTTTCTAAACTTGAAGTGTAGGAATTTATCATGTCGAAGTCAGTTGCATGTCGATGAATGTGATTGCAAGCTTTGTGTGCAGAAGAACGGCTTTTGCAGGGAATGTATGTGTCTTGTGTGTTCTAAGTTTGACAATGCGTCGAGCACATGTAGTTGGGTTGGGTGTGATGTTTGTCTTCACTGGTGTCATACTGACTGTGGATTACGAGAATCATATATTAGAAATGGACTTAGTACTACTGGAACGACTGAGATGCAGTTTCACTGCATTGCTTGTGATCACCCTTCTGAGATGTTTGGCTTTGTCAAAGAGGTGTTTCAAAATTTTGCAAAAGATTGGTCACACGAATCTCTTTGCAAGGAACTTGAATATGTGAAGCGAATCTTTTCTGCTAGCAAGGATATTAGAGGGAGACAGTTGCATGAGATTGCAGATAAAATGTTGCCGAGCCTGGCTATTAAGTCTAATATTCCTGAGGTTTTAAGACACATCATGTCTTTCTTTTCTGATTGTGATTCTTCCAAATTACCCATCACAACAACCTTTTCTGGGAAGGAACAAGTCAAAGAAAACAATTTGGTAGCTGGGCCCAGCCAGGAAGCTGCTTGGCTAAAATCTATTTATTCAGAAAAGCCAGCTCTGTTAGAAAGACCTGCAAGCATCCTTCCAAGATTTGACCAGAATGACAAAAGGACACTGGTGCAAGAGTTGCAGATGAGTAGTATCCAAAAAGACTTCTGTTTTGATGAATTGGAAagtataataaaaatcaaacatgCAGAGGCCAAAATGTTCCAATCTCGTGCTGATGATGCTAGGAGAGAAGCTGAAGGGTTAAAACGCATTGCCCTTGcaaagaatgagaaaattgaAGAAGAGTATGCCAATCGAATTGCCAAGCTGCGTTTTGCCGAGACAGATGATTTGCGTAAACAAAAGTTCGAAGAACTCCAAGCAATAGAGAGGGCACATCATGAGTATTTGAACATGAAAATGAGAATGGAGTCAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACTAAAATGAACCTTGCCATGTGA 3642 0.4135 MKRLRSTEDLHSYGEKNGADKNSNLSVKDSNSNSNPNLNRSFSSTGQRSFYYKQENVRKNLISSSSSSSRFDRDRDRDRTVEEDREGSRIVRKRSEHDFDGFDRRKGFDRYSRDGGGYSGGGDRDRDRDRNSIHRSESFCGGSRREFPKGFRSERDRSRREGSVSSWRRGLKDFDESSRGGNSRVEERIVRSPKGFSRDVKSPSWSKDSESEQSKKRSSESPRVFREATKSISKSPSWSKDSEKSEQSKSVSVEVKKSDELLQQVQSGSGSEMEEGELVPEPVAKTEAEAAYKDAAAGTESLQGSKDEQMHKKNEFGSSDADVVMEEKQMLSGEKEAKPMEDVDSEVKDAGKEIHELSKNQDKSTKEIAVTKAEIRTVNNDVKKDVCLNGDNTRHKEEETEKGENTEKALLNEEEHEVDKGVGGDKLDGNDEGSTENAVGDELKEEAMMESVTTNVKDKGKSISVAPDVAHASEDGLWIDRGSKDLTTCSSDVMEGPSTRGFELFSRSPVRKVEKSDSSVLKKENDDSLAMGQLDLTLSLPNVLLPIGAQETASQAPGSPSQALSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNSIDYEQSVGKSVGSRPLFQGFDWQALSQAEPKQKEVPSGQRTSMNGNGSLYQPQASWGVLDTQALKSQHSRPLEGSSKMGNGFERQLSFHKQLSGQSRQHDDVRSPTQSVGSHDNGSNYSFEKKKEVRERSSSSLHRSTSQKGQDHFLMGGLDFVKTIVARIVSEPVQAMSRKFHEMNGQYITRMKEGIRELMVNADNQGEILAFQNILQNKSDITYDVLVKCHQAQLEILVALKTGVVNYLHLDDNISSSDLAQVFLNLKCRNLSCRSQLHVDECDCKLCVQKNGFCRECMCLVCSKFDNASSTCSWVGCDVCLHWCHTDCGLRESYIRNGLSTTGTTEMQFHCIACDHPSEMFGFVKEVFQNFAKDWSHESLCKELEYVKRIFSASKDIRGRQLHEIADKMLPSLAIKSNIPEVLRHIMSFFSDCDSSKLPITTTFSGKEQVKENNLVAGPSQEAAWLKSIYSEKPALLERPASILPRFDQNDKRTLVQELQMSSIQKDFCFDELESIIKIKHAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYANRIAKLRFAETDDLRKQKFEELQAIERAHHEYLNMKMRMESDIKDLLSKMEATKMNLAM 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 305 348 - -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 721 738 - -
Tsu06g00972 1213 Coils Coil 1121 1152 - -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 17 68 - -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 1 16 - -
Tsu06g00972 1213 Coils Coil 1190 1210 - -
Tsu06g00972 1213 Pfam Coiled-coil region of Oberon 1086 1201 IPR032535 -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 1 348 - -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 631 656 - -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 634 656 - -
Tsu06g00972 1213 Pfam PHD - plant homeodomain finger protein 865 985 IPR032881 -
Tsu06g00972 1213 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 776 798 IPR004082 -
Tsu06g00972 1213 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 815 830 IPR004082 -
Tsu06g00972 1213 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 830 845 IPR004082 -
Tsu06g00972 1213 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 856 877 IPR004082 -
Tsu06g00972 1213 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 902 922 IPR004082 -
Tsu06g00972 1213 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 972 991 IPR004082 -
Tsu06g00972 1213 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1108 1128 IPR004082 -
Tsu06g00972 1213 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1147 1169 IPR004082 -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 385 446 - -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 119 224 - -
Tsu06g00972 1213 CDD PHD_OBE1_like 895 951 - -
Tsu06g00972 1213 PANTHER PROTEIN OBERON 4 1 1213 - -
Tsu06g00972 1213 Coils Coil 340 360 - -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 694 747 - -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 237 256 - -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 257 271 - -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 694 720 - -
Tsu06g00972 1213 MobiDBLite consensus disorder prediction 69 112 - -
Tsu06g00972 1213 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1213 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00972 Tsu-Chr6 8837577 8842995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00972 865 1010 PHD Gene Family AT5G57380 26.712 9.22e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00972 - - mtr:MTR_4g039650 1758.42