Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu06g00962 | ATGGCATTTCACGTTGCTTGTCCAATTACATGTCGGAGAATTTGTTTCTGTTCGTTAGGGTTTCCGCGTTCTCTACAAGGAACGAAGAACCCTACGAGTGGTTTTCTAGAAGATGTTACGGTTCTTGAAGATTTTCTATCGGAAAATAAACGGAAAGAAGATGTTACGATTCAAGTTGCTGTTCCTAAAGTTGTTCCACCGCCGCCGACGGAGATTGTTGCTGTTAGCGGTGGTGATGTTCTTAATGATGAATCTGCTTCTATGAAAGCTAAACGTGTTGCCCTTCAGAAAAAAGGTGCTGCTGCTATGATTGCTGCTGAAGAGTATGCTAGGAAGTTTGAGTCTGGTGATTTGTTGGATACATCGGGAAATCTTAACGGAGAAGAACAAGGGCAATCCAATGTCAAGGTCTTTTGTCGAATGTGCAATCGTGTTGAGAACGAAGGAAGTGAGAAAGCGAAAAAGATGCTGTCGTGTAAAAGTTGTAGTAAGAAGTACCATAGGAGCTGCTTGAAAAGTTGGTCTAATAATAGAGATTTATTTCATTGGAGTTCGTGGACCTGTCGTGCTTGCCGAATTTGTGAGGCTTGCAGAAGGACCGGTGATCCAAGTAAATTCATGTTTTGCAAAAGATGTGATGGTGCTTACCATTGTTACTGTCTGCAACCTCCTCATAAGAATGTTAGTACTGGGCCCTATTTGTGCCCAAAACACACAAAGTGTCACAGTTGCGCATCCAATGTCCCTGGAAATGGATTAAGTGTGAGGTGGTTTTTGGGATACACGTGTTGTGATGCATGTGGAAGATTGTTTGTGAAAGGGAATTACTGTCCTGTTTGTCTGAAGGTTTACAGAGATTCAGAATCAACACCAATGGTTTGCTGTGATCATTGCCAGCGCTGGGTGCATTGCCAGTGTGATAATATTAGTGAGGAAAGATATCACCAATTTCAAGTGGACGGGAATTTGCAGTATACATGTCCTACTTGTCGTGGGGAATGTTATCAGGTCAAGAATCTTGAAGATGCTGTTCAAGAGCTTTGGAGGAGAAAGAATATTGCTGATAAAGATTTAATTACAAGCTTGAGGGCTGCAGCTGGTTTACCGACGCAAGaagaaatattttctatttcacCATATTCTGACGATGAGGATAGTGGGACTTTGAAGATAAAAAGTGATTCAGCACGTTCCTTTAAGTTCTCTTTTAAGAATTTTTCCAATAACTCGCCTACGAAGATGAAAGATTATGGAAAGAAATCTTCAACCAAAAAGACTTCTAAGAAAAAGGACTCTCTGTCATTCATGACTGGTAAAATTGATGCACACCATAGTTTTGAAGGACATAGTTTTGATGATGATAAGATTGATGATATGCAATCCCTGAGAAATGAAGGTCCTGACGTTTATTCATCACCTGCTACCGGAAGCCTGAGTCAAACTGAAGTTCCTTATCCCGTCAATCAGCCAGGGATTTTGAAACGTAAGTTTGTTGATGAGGTGATGGGCAGTGATGAAGAAAGGAAACCCAGAGTTGTTCGAATTAAAAGCAATAAGTCAAATATTTTGGATAGTGAAGAGGAGAGTGGAAAACGTGGTGATAAGACTCAGAATGTGAAAGGGAAAAAGTTGGTTATAAATTTGGGAGCACGGAAAATTAATGTGGCTAGTTCTCCACTGTCTGAGAATGCAAGCTTCCAAAGAGATAAAGATGTGGTTACTGCCAATGGAAATGAAAATCTAGCCCACTTGACAAAGGGAAACAAGTTTGCATTAGATAGACATGATGGAGCAGCTCGACATATTGATGGTAAAGgAAGTAGGGTTGACTCTGGCCAATCAAAACATCTAAAGGTTTCGGGAAGAGAAGGAAATATGATCAAGTTGGGAAAAGTTAAGCCAGGTGTTTCTGAATTCAACCTCACCTCTGGCAGAGGCAATATGTCTGATGGGTGTGAAGTTAATCCTTTAGAGCGATCTCACATCGTGCGGGGAAAACGCAGTACTCATGGAATGGCCGATCAAGCTGGATTAGATGCAACATCAAGAGGTGATAGGACATATTTGACGAAGCAGTCGGAAGGTAGCTCTGATGTATATGACGAGACACATGACAATAATCATACACCTTCACATTCTTTGCCAAAAGATTCGAAACCTTTACTGAGATTTAAATTCAAAAGGCCTAGCATTGAAAGTCAAAGTTCTCCTCATCAGGAAGAGAAGACCACAGTCAAGGGTCAGAGATCAAAAAGGAAGAGGCCTTCACCTTTTAAAGAAATATCATTGTTTAATAATTCTGAAGGTGTAAGTCAATCTCCTGGAGACACTATAAATGATGAGATCATGGATGCAAACTGGATTTTGATGAAATTGGGAAATGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGCACAAGGGAGAGGTTACTGACATAGTTGAAGGCACCTCAAAGATACATGTTACTTACGATGATGGAAAAGTGACTGTCGTTGAACTCATGAAGCAGGGGATCCGTTTTGTTCCTCAAAAGCAAAAGAGATCAAAATCATGA | 2574 | 0.4037 | MAFHVACPITCRRICFCSLGFPRSLQGTKNPTSGFLEDVTVLEDFLSENKRKEDVTIQVAVPKVVPPPPTEIVAVSGGDVLNDESASMKAKRVALQKKGAAAMIAAEEYARKFESGDLLDTSGNLNGEEQGQSNVKVFCRMCNRVENEGSEKAKKMLSCKSCSKKYHRSCLKSWSNNRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKNVSTGPYLCPKHTKCHSCASNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDHCQRWVHCQCDNISEERYHQFQVDGNLQYTCPTCRGECYQVKNLEDAVQELWRRKNIADKDLITSLRAAAGLPTQEEIFSISPYSDDEDSGTLKIKSDSARSFKFSFKNFSNNSPTKMKDYGKKSSTKKTSKKKDSLSFMTGKIDAHHSFEGHSFDDDKIDDMQSLRNEGPDVYSSPATGSLSQTEVPYPVNQPGILKRKFVDEVMGSDEERKPRVVRIKSNKSNILDSEEESGKRGDKTQNVKGKKLVINLGARKINVASSPLSENASFQRDKDVVTANGNENLAHLTKGNKFALDRHDGAARHIDGKGSRVDSGQSKHLKVSGREGNMIKLGKVKPGVSEFNLTSGRGNMSDGCEVNPLERSHIVRGKRSTHGMADQAGLDATSRGDRTYLTKQSEGSSDVYDETHDNNHTPSHSLPKDSKPLLRFKFKRPSIESQSSPHQEEKTTVKGQRSKRKRPSPFKEISLFNNSEGVSQSPGDTINDEIMDANWILMKLGNDAIGKRVEVHQTSDNSWHKGEVTDIVEGTSKIHVTYDDGKVTVVELMKQGIRFVPQKQKRSKS | 857 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu06g00962 | 857 | MobiDBLite | consensus disorder prediction | 446 | 462 | - | - | |
| Tsu06g00962 | 857 | ProSitePatterns | Zinc finger PHD-type signature. | 139 | 191 | IPR019786 | - | |
| Tsu06g00962 | 857 | Gene3D | - | 793 | 841 | - | - | |
| Tsu06g00962 | 857 | ProSiteProfiles | Zinc finger PHD-type profile. | 274 | 333 | IPR019787 | - | |
| Tsu06g00962 | 857 | ProSiteProfiles | Zinc finger PHD-type profile. | 136 | 194 | IPR019787 | - | |
| Tsu06g00962 | 857 | PANTHER | PHD FINGER FAMILY PROTEIN | 2 | 851 | - | - | |
| Tsu06g00962 | 857 | SMART | PHD_3 | 276 | 331 | IPR001965 | - | |
| Tsu06g00962 | 857 | SMART | PHD_3 | 193 | 239 | IPR001965 | - | |
| Tsu06g00962 | 857 | SMART | PHD_3 | 138 | 192 | IPR001965 | - | |
| Tsu06g00962 | 857 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 248 | IPR013083 | - | |
| Tsu06g00962 | 857 | MobiDBLite | consensus disorder prediction | 697 | 726 | - | - | |
| Tsu06g00962 | 857 | PANTHER | HISTONE ACETYLTRANSFERASE | 2 | 851 | - | - | |
| Tsu06g00962 | 857 | MobiDBLite | consensus disorder prediction | 412 | 432 | - | - | |
| Tsu06g00962 | 857 | ProSiteProfiles | Zinc finger RING-type profile. | 277 | 331 | IPR001841 | - | |
| Tsu06g00962 | 857 | MobiDBLite | consensus disorder prediction | 465 | 486 | - | - | |
| Tsu06g00962 | 857 | SUPERFAMILY | FYVE/PHD zinc finger | 274 | 332 | IPR011011 | - | |
| Tsu06g00962 | 857 | SUPERFAMILY | FYVE/PHD zinc finger | 128 | 193 | IPR011011 | - | |
| Tsu06g00962 | 857 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 271 | 333 | IPR013083 | - | |
| Tsu06g00962 | 857 | Pfam | PHD-finger | 276 | 331 | IPR019787 | - | |
| Tsu06g00962 | 857 | MobiDBLite | consensus disorder prediction | 446 | 486 | - | - | |
| Tsu06g00962 | 857 | MobiDBLite | consensus disorder prediction | 417 | 432 | - | - | |
| Tsu06g00962 | 857 | MobiDBLite | consensus disorder prediction | 664 | 760 | - | - | |
| Tsu06g00962 | 857 | SUPERFAMILY | FYVE/PHD zinc finger | 183 | 244 | IPR011011 | - |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Tsu06g00962 | PHD | 5.6e-07 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu06g00962 | - | - | mtr:MTR_4g037745 | 1450.26 |