LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu06g00942	ATGAAGCGTGCTAGAAGCACAGGTGATTCTAGTTCTTCTAGGGTTTCAACATCTCTTGAAGCAGGAATTATCAAGAAACTTCGGTTAGAGAATTTCATGTGTCATTCAAATCACGAAACTGAGTTCGGAAATCACGTTAATCTCATCACTGGACAAAATGGAAGTGGTAAAAGTGCAATCCTTACTGCGTTGTGTGTCGCATTTGGTTGTCGAGCTAAAGGGACTCAAAGAGCATCTACTTTGAAAGATTTCATCAAAACTGGTGCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGATGACGCTTTCAAGCCTGAAATATATGGTGATGTCATCATTGTAGAACGTAGGATATCTGAATCCACAAGCTCTATTACATTGAAAGATCACCAAGGAAAGAAAGTTTTCAGTCGGAAAGCAGATCTTCAGGAAATCATTGAACATTTCAATATTGATGTGGAGAATCCGTGCGTGATTATGAGTCAAGACAAAAGCAGAGAATTCCTGCACTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCTACACTTCTTCAGCAAGTCAGTGATCTTCTGGAAAGCATTTCCAGTGAAATAAATACTGCACTTGGAGTAGTTGAAGAATTAGAAGCTACAATAAGACCTATAGAGAAGGAGCTTAACGAGCTGCAAGTTAAAATTACAACGATGGAACACGTTGAACAAATTTCCATACAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGAAACTTGAGGAACAAAATGTAAGGATTGAAAAGCTGAAGAGTCGGATTCCTACCTGCCAAGCTAAGATAGATAAACAACTGCATCAGCTTGAAAAATTAAGTGAAAACTATTCTACGAAGAAAGCTGAAATTGCAAGTATGATGACATCAAAAGTTAAGCAAATGAAGGAAATTTTAAGCCGCTCTATGTCATCGGCAAAAAAAGAAGCATATGAACTTCAGCGAGAGTGCAAATGCAAAACTAGTAACATACAGAAGCTGGTACAACAGCTCAAAAAGCTTGAACTACAAATGCAGGATATTCATGAGCAGCATGTGAAAAATACCCAGGCTGAAGAATCTGACATGGAGGAAAAACTGAAGGGGCTTCGAGATGAGGTTCATGATGCTAAGTCCGAATTGGATAGATTGAAAGAAGAAGAGACTATGTTAATGAACAACAAAAATAGGCAAAAGGACGAAATCAGAATGATTGATGATAAGATCCGAGATCATGAAAAGAAGTATAATGAAATCATGCTTAATATTCGTAATCTTAAACAACAACAAAGCAACAAGATCATGGCTTTTGGAGGAAATAAAGTGATTAATCTGTTACGTACAATTGAAAGATGTCATCAAAGGTTTAAAATGCCTCCCATTGGTCCAATTGGTGCTCATCTGAAGTTGCTTAATGGTAATAAATGGGCGGTTGCTGTTGAACATGCCATCGGGAGAATGCTCAATTCTTTTATAGTGACTGATCACAAGGATTTTCGTCTTTTGAAACAATGTGCGAATGAAGTAAACTATGGTCatcttcaaattattatttatgatttttcaaCCCCAAGGTTGATGATACCACAGCACATGCTTCCTAATACAAACCATCCATCAGTTCTGTCAGTCTTACAATGCGAGAATCACACTGTGATGAATGTCTTAGTCGATCTGGGAAGTGTTGAGAGACAAGTGCTTGTTAACGACTATAATACTGGGAAGGTTGTTGCCTTTGAAGAAAGGATCCAAAATCTGAAGGAGGTCTTCACGGTGGACGGTTGTAAAATGTTTTCGCGAGGTCCAGTACAGACAACTCTTCCTCCAAATAAGAGTCAACGATATGGTCGTCTAAGTAGTTCTGTTGAAGGTGCCATTGAGAAATTTAGTAATGATGCATCCAATGAACAAAAAGCTGCAAATGACTATAAATGGAATAAAAGAGATGCAGAGCTCAAGCTTGAGGATCTAGACAAGAAGATGAATTCTATAAAGaGGCTTTGTTTAAATGCTGGAAAAAGTTTTAATTCTAAGAAGCTTGCTTTGGAGGAGGCAACAAATCAACAAGCTGCTGAACGTAACTTGACACCTTTGTCCTCAGTTGATGAGATTGTTGAAGAAATTTCAgaaataaacaaaaaaataaaagcagaGGAGGTGTTGTTAGAAGGCCTTGAGCAGAGGAGGCATGAAGCAGTGGGAAAAGCAAACGATCTTGAAGAAAAATTTGACGAATTGTGTGAATCAGCAAATACTGAACTTGCTTCCCTTGAGAAAGCTGAGAGTGAACTTATGGAGATTGAAAGAGAAATTGATTCAGCAAAAAAGGCGAAGGATCATTATGATAATGTCATGAAAACCAAAGTCCTTCATGATATTAAGGAGGCAGAGGAACACCATCTGGAGCTTACAAAAAGGCGTGAGGTAAATGTTGAGAAGGCTTCCGTAATTTGCTGTCAGAATGAACTTGCTACGATAGGAGGTTGTGATGGGCGAACCCCAGAGCAAATCAGTGGCCAATTAGAAAATCTAAATCGCACACTTAAGCGTGAGAGCCAAAGATACTCCGAATCTATTGATGATCTGAGGATGCTATATGCAAAAAAAGAACGTAAGATTATAAAAAAGCAGCAACTTTACAAAGCCCTTCGACAGAAATTGAATGCTTGCCAAGGTGCTTTAGAGTTTCGGATGAGAAAGTTTCAGACAAACGCAACTAATCTCAAGCATCAGCTTTCTTGGAAATTTAATGgccatttgaaaaagaaggGGATCAGTGGAGTTATCAAAGTGGATTATGAGGAGATGACCTTATCGATTGAGGTACAGATGCCCCAAGATGCATCAAACAGAGCTGTTCGAGACACAAGGGGACTTTCAGGTGGAGAACGATCTTTTTCAACTTTGTGCTTTGCATTAGCCCTTCATGAAATGACAGAGTCCCCATTTAGAGCAATGGATGAATTTGATGTCTTTATGGATGCAGTAAGCAGAAAAATTAGCATGGACACTCTAATTGATTTTGCTGAGGCACAAGGATCCCAGTGGATATTGATCACCCCACATGATACTAGCTTGGTGAAGGCAGGGAATAGGGTAAAGAAGATGCAAATGGCAGCTCCCCGTTCTTGA	3177	0.3815	MKRARSTGDSSSSRVSTSLEAGIIKKLRLENFMCHSNHETEFGNHVNLITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIHVEIQNEGDDAFKPEIYGDVIIVERRISESTSSITLKDHQGKKVFSRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVSDLLESISSEINTALGVVEELEATIRPIEKELNELQVKITTMEHVEQISIQVQQLKKKLAWSWVYDVDKKLEEQNVRIEKLKSRIPTCQAKIDKQLHQLEKLSENYSTKKAEIASMMTSKVKQMKEILSRSMSSAKKEAYELQRECKCKTSNIQKLVQQLKKLELQMQDIHEQHVKNTQAEESDMEEKLKGLRDEVHDAKSELDRLKEEETMLMNNKNRQKDEIRMIDDKIRDHEKKYNEIMLNIRNLKQQQSNKIMAFGGNKVINLLRTIERCHQRFKMPPIGPIGAHLKLLNGNKWAVAVEHAIGRMLNSFIVTDHKDFRLLKQCANEVNYGHLQIIIYDFSTPRLMIPQHMLPNTNHPSVLSVLQCENHTVMNVLVDLGSVERQVLVNDYNTGKVVAFEERIQNLKEVFTVDGCKMFSRGPVQTTLPPNKSQRYGRLSSSVEGAIEKFSNDASNEQKAANDYKWNKRDAELKLEDLDKKMNSIKRLCLNAGKSFNSKKLALEEATNQQAAERNLTPLSSVDEIVEEISEINKKIKAEEVLLEGLEQRRHEAVGKANDLEEKFDELCESANTELASLEKAESELMEIEREIDSAKKAKDHYDNVMKTKVLHDIKEAEEHHLELTKRREVNVEKASVICCQNELATIGGCDGRTPEQISGQLENLNRTLKRESQRYSESIDDLRMLYAKKERKIIKKQQLYKALRQKLNACQGALEFRMRKFQTNATNLKHQLSWKFNGHLKKKGISGVIKVDYEEMTLSIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISMDTLIDFAEAQGSQWILITPHDTSLVKAGNRVKKMQMAAPRS	1058

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu06g00942	1058	Pfam	RecF/RecN/SMC N terminal domain	24	1053	IPR003395	-
	Tsu06g00942	1058	CDD	ABC_SMC6_euk	24	178	-	-
	Tsu06g00942	1058	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	24	1051	IPR027417	-
	Tsu06g00942	1058	Coils	Coil	211	231	-	-
	Tsu06g00942	1058	Coils	Coil	655	682	-	-
	Tsu06g00942	1058	PANTHER	STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6	5	1058	-	-
	Tsu06g00942	1058	CDD	ABC_SMC6_euk	962	1058	-	-
	Tsu06g00942	1058	Gene3D	-	741	1055	IPR027417	-
	Tsu06g00942	1058	SUPERFAMILY	Smc hinge domain	458	610	IPR036277	GO:0005515\|GO:0005524\|GO:0005694\|GO:0051276
	Tsu06g00942	1058	Coils	Coil	318	366	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu06g00942	Tsu-Chr6	8514481	8536087	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu06g00942	21	1058	Structural Maintenance of Chromosomes family	AT5G07660	57.212	0.0	1172

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu06g00942	K22804		-	gmx:100816916	1569.29

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu06g00942	06	8514481	8536087	Tsu06g00942	06	8514481	8536087	ECH

Showing 1 to 1 of 1 entries