Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00942 ATGAAGCGTGCTAGAAGCACAGGTGATTCTAGTTCTTCTAGGGTTTCAACATCTCTTGAAGCAGGAATTATCAAGAAACTTCGGTTAGAGAATTTCATGTGTCATTCAAATCACGAAACTGAGTTCGGAAATCACGTTAATCTCATCACTGGACAAAATGGAAGTGGTAAAAGTGCAATCCTTACTGCGTTGTGTGTCGCATTTGGTTGTCGAGCTAAAGGGACTCAAAGAGCATCTACTTTGAAAGATTTCATCAAAACTGGTGCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGATGACGCTTTCAAGCCTGAAATATATGGTGATGTCATCATTGTAGAACGTAGGATATCTGAATCCACAAGCTCTATTACATTGAAAGATCACCAAGGAAAGAAAGTTTTCAGTCGGAAAGCAGATCTTCAGGAAATCATTGAACATTTCAATATTGATGTGGAGAATCCGTGCGTGATTATGAGTCAAGACAAAAGCAGAGAATTCCTGCACTCTGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCTACACTTCTTCAGCAAGTCAGTGATCTTCTGGAAAGCATTTCCAGTGAAATAAATACTGCACTTGGAGTAGTTGAAGAATTAGAAGCTACAATAAGACCTATAGAGAAGGAGCTTAACGAGCTGCAAGTTAAAATTACAACGATGGAACACGTTGAACAAATTTCCATACAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGAAACTTGAGGAACAAAATGTAAGGATTGAAAAGCTGAAGAGTCGGATTCCTACCTGCCAAGCTAAGATAGATAAACAACTGCATCAGCTTGAAAAATTAAGTGAAAACTATTCTACGAAGAAAGCTGAAATTGCAAGTATGATGACATCAAAAGTTAAGCAAATGAAGGAAATTTTAAGCCGCTCTATGTCATCGGCAAAAAAAGAAGCATATGAACTTCAGCGAGAGTGCAAATGCAAAACTAGTAACATACAGAAGCTGGTACAACAGCTCAAAAAGCTTGAACTACAAATGCAGGATATTCATGAGCAGCATGTGAAAAATACCCAGGCTGAAGAATCTGACATGGAGGAAAAACTGAAGGGGCTTCGAGATGAGGTTCATGATGCTAAGTCCGAATTGGATAGATTGAAAGAAGAAGAGACTATGTTAATGAACAACAAAAATAGGCAAAAGGACGAAATCAGAATGATTGATGATAAGATCCGAGATCATGAAAAGAAGTATAATGAAATCATGCTTAATATTCGTAATCTTAAACAACAACAAAGCAACAAGATCATGGCTTTTGGAGGAAATAAAGTGATTAATCTGTTACGTACAATTGAAAGATGTCATCAAAGGTTTAAAATGCCTCCCATTGGTCCAATTGGTGCTCATCTGAAGTTGCTTAATGGTAATAAATGGGCGGTTGCTGTTGAACATGCCATCGGGAGAATGCTCAATTCTTTTATAGTGACTGATCACAAGGATTTTCGTCTTTTGAAACAATGTGCGAATGAAGTAAACTATGGTCatcttcaaattattatttatgatttttcaaCCCCAAGGTTGATGATACCACAGCACATGCTTCCTAATACAAACCATCCATCAGTTCTGTCAGTCTTACAATGCGAGAATCACACTGTGATGAATGTCTTAGTCGATCTGGGAAGTGTTGAGAGACAAGTGCTTGTTAACGACTATAATACTGGGAAGGTTGTTGCCTTTGAAGAAAGGATCCAAAATCTGAAGGAGGTCTTCACGGTGGACGGTTGTAAAATGTTTTCGCGAGGTCCAGTACAGACAACTCTTCCTCCAAATAAGAGTCAACGATATGGTCGTCTAAGTAGTTCTGTTGAAGGTGCCATTGAGAAATTTAGTAATGATGCATCCAATGAACAAAAAGCTGCAAATGACTATAAATGGAATAAAAGAGATGCAGAGCTCAAGCTTGAGGATCTAGACAAGAAGATGAATTCTATAAAGaGGCTTTGTTTAAATGCTGGAAAAAGTTTTAATTCTAAGAAGCTTGCTTTGGAGGAGGCAACAAATCAACAAGCTGCTGAACGTAACTTGACACCTTTGTCCTCAGTTGATGAGATTGTTGAAGAAATTTCAgaaataaacaaaaaaataaaagcagaGGAGGTGTTGTTAGAAGGCCTTGAGCAGAGGAGGCATGAAGCAGTGGGAAAAGCAAACGATCTTGAAGAAAAATTTGACGAATTGTGTGAATCAGCAAATACTGAACTTGCTTCCCTTGAGAAAGCTGAGAGTGAACTTATGGAGATTGAAAGAGAAATTGATTCAGCAAAAAAGGCGAAGGATCATTATGATAATGTCATGAAAACCAAAGTCCTTCATGATATTAAGGAGGCAGAGGAACACCATCTGGAGCTTACAAAAAGGCGTGAGGTAAATGTTGAGAAGGCTTCCGTAATTTGCTGTCAGAATGAACTTGCTACGATAGGAGGTTGTGATGGGCGAACCCCAGAGCAAATCAGTGGCCAATTAGAAAATCTAAATCGCACACTTAAGCGTGAGAGCCAAAGATACTCCGAATCTATTGATGATCTGAGGATGCTATATGCAAAAAAAGAACGTAAGATTATAAAAAAGCAGCAACTTTACAAAGCCCTTCGACAGAAATTGAATGCTTGCCAAGGTGCTTTAGAGTTTCGGATGAGAAAGTTTCAGACAAACGCAACTAATCTCAAGCATCAGCTTTCTTGGAAATTTAATGgccatttgaaaaagaaggGGATCAGTGGAGTTATCAAAGTGGATTATGAGGAGATGACCTTATCGATTGAGGTACAGATGCCCCAAGATGCATCAAACAGAGCTGTTCGAGACACAAGGGGACTTTCAGGTGGAGAACGATCTTTTTCAACTTTGTGCTTTGCATTAGCCCTTCATGAAATGACAGAGTCCCCATTTAGAGCAATGGATGAATTTGATGTCTTTATGGATGCAGTAAGCAGAAAAATTAGCATGGACACTCTAATTGATTTTGCTGAGGCACAAGGATCCCAGTGGATATTGATCACCCCACATGATACTAGCTTGGTGAAGGCAGGGAATAGGGTAAAGAAGATGCAAATGGCAGCTCCCCGTTCTTGA 3177 0.3815 MKRARSTGDSSSSRVSTSLEAGIIKKLRLENFMCHSNHETEFGNHVNLITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIHVEIQNEGDDAFKPEIYGDVIIVERRISESTSSITLKDHQGKKVFSRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVSDLLESISSEINTALGVVEELEATIRPIEKELNELQVKITTMEHVEQISIQVQQLKKKLAWSWVYDVDKKLEEQNVRIEKLKSRIPTCQAKIDKQLHQLEKLSENYSTKKAEIASMMTSKVKQMKEILSRSMSSAKKEAYELQRECKCKTSNIQKLVQQLKKLELQMQDIHEQHVKNTQAEESDMEEKLKGLRDEVHDAKSELDRLKEEETMLMNNKNRQKDEIRMIDDKIRDHEKKYNEIMLNIRNLKQQQSNKIMAFGGNKVINLLRTIERCHQRFKMPPIGPIGAHLKLLNGNKWAVAVEHAIGRMLNSFIVTDHKDFRLLKQCANEVNYGHLQIIIYDFSTPRLMIPQHMLPNTNHPSVLSVLQCENHTVMNVLVDLGSVERQVLVNDYNTGKVVAFEERIQNLKEVFTVDGCKMFSRGPVQTTLPPNKSQRYGRLSSSVEGAIEKFSNDASNEQKAANDYKWNKRDAELKLEDLDKKMNSIKRLCLNAGKSFNSKKLALEEATNQQAAERNLTPLSSVDEIVEEISEINKKIKAEEVLLEGLEQRRHEAVGKANDLEEKFDELCESANTELASLEKAESELMEIEREIDSAKKAKDHYDNVMKTKVLHDIKEAEEHHLELTKRREVNVEKASVICCQNELATIGGCDGRTPEQISGQLENLNRTLKRESQRYSESIDDLRMLYAKKERKIIKKQQLYKALRQKLNACQGALEFRMRKFQTNATNLKHQLSWKFNGHLKKKGISGVIKVDYEEMTLSIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISMDTLIDFAEAQGSQWILITPHDTSLVKAGNRVKKMQMAAPRS 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00942 1058 Pfam RecF/RecN/SMC N terminal domain 24 1053 IPR003395 -
Tsu06g00942 1058 CDD ABC_SMC6_euk 24 178 - -
Tsu06g00942 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 1051 IPR027417 -
Tsu06g00942 1058 Coils Coil 211 231 - -
Tsu06g00942 1058 Coils Coil 655 682 - -
Tsu06g00942 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 5 1058 - -
Tsu06g00942 1058 CDD ABC_SMC6_euk 962 1058 - -
Tsu06g00942 1058 Gene3D - 741 1055 IPR027417 -
Tsu06g00942 1058 SUPERFAMILY Smc hinge domain 458 610 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu06g00942 1058 Coils Coil 318 366 - -
Tsu06g00942 1058 Coils Coil 368 444 - -
Tsu06g00942 1058 Coils Coil 285 305 - -
Tsu06g00942 1058 Coils Coil 856 876 - -
Tsu06g00942 1058 Coils Coil 716 799 - -
Tsu06g00942 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 5 1058 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Tsu06g00942 1058 Coils Coil 881 901 - -
Tsu06g00942 1058 Gene3D - 23 222 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00942 Tsu-Chr6 8514481 8536087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00942 21 1058 Structural Maintenance of Chromosomes family AT5G07660 57.212 0.0 1172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00942 K22804 - gmx:100816916 1569.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00942 06 8514481 8536087 Tsu06g00942 06 8514481 8536087 ECH