Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00941 ATGGAGAAGAACAATGGCAAAACCTGTGAGATTTGTGGTAAGTGGTTCTCCAGTGGGAAAGCCATTGGAGGCCACATGAGATCTCACATGGTCAAATTGCCGGTTCATCCAAAGCTTGAAATTAATAATCAAGCATTACAAAATTCAGCCGATTTAACCCAGCATCCAATTCAATATGCTTCCTTACTCACTTCTCATCCcaaaaaagaacaaatacaGAATTTTCAATCTATGAAACGCAACTTCTCTGCCTTATCTCTAAACACAAACAGAGAAAACGAATCTGAGTCCAAGATGAAAAACCCAACCTTCAAACGATCCAAATGCCACCGCAAACATAATGCAGCAGTTCCAGATCAAACAAGTTCAATATGTGAAACTGAAACTCCTGAAGGTGCTTcaatatgtgaaaatgaaaCTCTTGAAGGTGCTTGGGTGGTGTGGGGGTTTTATAAAGACGCACAAAAAAGGGAAGCAGTCAAGGCACAGAAAATGAAGGAAATCTACGAAATGAAAGCAAAAGACAATGAAGGAAGTAGTGATGACTCACTTGTTCAAGCTCACTTGCGAGCCAGTTCCAAGTGTGGGAGGTGTGGAAAAGTATTCCGATCTTATCAAGCTCTTGGTGGACACAAAGTATATTGCAAAAGTGACAACAACGGCAATTGTATAGAACAGAAACCTTTTCAGTGCTCATATTGCGGCAGAATGTTCAAGTCTGCTCAAGCGCTCGGTGGACACAAGAGGGTACACTTTTCCAGTGCTAATGAATTTCGAGcGTATCGCGGAACAATAGCCATTTGTTCAGATTCAGCTGCGTTACGGTGCAACTATAGCCGGAAAGGTTCAGTCGAAGCTGCTATGCAGAATGCAGATGATCTGGCCTTAGAAGCATGTGGCACAAGGACAGAGCAGAATGGAACCGCATATGTTACTCCATTCTCCTTGGTTCCATCTTATTTAGTGAATCAAAATGCATTTCTTCGTCGAATTCATTTTGTTTTGTGgtaa 1011 0.4055 MEKNNGKTCEICGKWFSSGKAIGGHMRSHMVKLPVHPKLEINNQALQNSADLTQHPIQYASLLTSHPKKEQIQNFQSMKRNFSALSLNTNRENESESKMKNPTFKRSKCHRKHNAAVPDQTSSICETETPEGASICENETLEGAWVVWGFYKDAQKREAVKAQKMKEIYEMKAKDNEGSSDDSLVQAHLRASSKCGRCGKVFRSYQALGGHKVYCKSDNNGNCIEQKPFQCSYCGRMFKSAQALGGHKRVHFSSANEFRAYRGTIAICSDSAALRCNYSRKGSVEAAMQNADDLALEACGTRTEQNGTAYVTPFSLVPSYLVNQNAFLRRIHFVLW 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00941 336 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Tsu06g00941 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Tsu06g00941 336 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 257 - -
Tsu06g00941 336 SMART c2h2final6 229 251 IPR013087 -
Tsu06g00941 336 SMART c2h2final6 7 29 IPR013087 -
Tsu06g00941 336 Pfam C2H2-type zinc finger 9 30 - -
Tsu06g00941 336 Pfam C2H2-type zinc finger 195 215 - -
Tsu06g00941 336 Pfam C2H2-type zinc finger 229 251 - -
Tsu06g00941 336 Gene3D Classic Zinc Finger 192 251 - -
Tsu06g00941 336 SUPERFAMILY beta-beta-alpha zinc fingers 194 251 IPR036236 -
Tsu06g00941 336 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 257 IPR044303 GO:0006355
Tsu06g00941 336 SUPERFAMILY beta-beta-alpha zinc fingers 8 34 IPR036236 -
Tsu06g00941 336 MobiDBLite consensus disorder prediction 89 115 - -
Tsu06g00941 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Tsu06g00941 336 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00941 9 265 C2H2 Transcription Factor Family AT1G02030 27.875 1.24e-17 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu06g00941 zf-C2H2_6 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00941 - - cam:101511854 238.81