Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00939 ATgaaaccttttcttttctttctcatcACATTCTCCTACCTTTGTCAAACACAGTTACCACTAGTTTCCTCTGTCACAACAACTCTACCCTTTCAACTCATCACTCTCCTCTCAATAAAATCCTCCATCATTGACCCTCTCAATCATCTCAATGACTGGAAAATCAACCCTTCTAATTCTTCCCCTACTTTCTCAAACTCTAATAACCACCAAGACCCAATTTGGTGTTCTTGGAGAGGCATCACTTGTCacccaaaaacaacacaaatcaCTTCCCTAAACCTCTCTAACCTCAACCTTTCAGGCACAATTTCACCGCAAATCCGCTACTTAACCACCTTAACCCACTTGAACATAAGTGGAAATGACTTCAATGGAACTTCCCAAACAGGAATTTTCCAACTCATTGGGCTCAGAACACTGGACATCAGTCATAACTCCTTCAGCTCAACTTTCCCACCTGGAATTGCAAAGCTAAGATTCTTAAGAATCTTCGATGCTTACAATAACAACTTCACAGGTCCTCTTCCTGAAGAACTCATCAAACTTCCATTTCTAGAGCAGCTCAACCTTGGTGGAAGCTACTTCAGTGGGAGAATTCCACAAAGTTATGGCACTTTTAAAAGACTCAAATTCCTAAAATTATCTGGTAATGCATTGGAAGGTTCACTACCTCCTCAATTAGGCCTATTATCAGAGCTACAACACTTGGAAATTGGATACAACACATTTTCTGGGACAATACCAATTGAATTAACATTGTTGTCTAATCTCACTTACTTAGACATCTCAGCAGCCAACATTTCAGGCCAAGTGATTCCTGAACTAGGAAACTTAACCATGCTTGAAACATTGCTTCTTTTCGAGAATTCCTTAAGTGGCAAAATCCCATCAACCATAGGAAAGTTGAAATTCCTAAAAGCTATTGATTTATCAGAAAATCAACTCACAGGCTCAATTCCACCCGAAATAACAATGCTGAAGGAACTAGAAGATTTGAGGCTCATGTATAACAAGTTGACTGGTGAAATTCCACAAGGAATTGGTGAGCTTCCAAAGCTCAACATTTTCCAAGTTTTCAATAACTCACTCAGTGGTACACTACCACCAAAACTCGGCTCCAACGGATTACTCCAACGACTCGATGTTTCCACAAACTCACTTCAAGGTCCAATCCCTGTGAACATTTGTAAAGGAAACAATCTTGTTAAGTTCAATCTTTTCAACAACAAATTCACCAATAATCTTCCATTATCACTCACAAACTGCACCTCACTAGCCAGAGTCCGTATCCAAAACAACAACCTCAATGGGTCAATTCCACAAACACTTACCATGCTTCCTAATTTAACCTACCTTGACTTAAGCAACAACAATTTCAACGGTGAAATTCCTCAAGAATTTGGAAACCTTCAATATTTAAACATCTCCGGAAACTCTTTCGAAAGCGAATTACCAAACAGCATTTGGAATTCAAGTAATCTACAGATTTTCTCAGCTTCATTTTCGAAAATCACCGGTCAAATTCCCGATTTCATCGGTTGCAAAACGATTTACAAGATTGAATTGCAAGGGAATTTCATTAACGGTAACATTCCTTGGAATATCCGTGATTGCGAAAAACTGATTCTGTTAAATCTAAGTAGAAACAATCTCACCGGAATCATACCTTGGGAAATTGCAATTCTACCTTCAATCACCGACGTTGATCTCTCACAAAACTCACTCACCGGAATCATTCCTTCAAGCTTCAACAACTGTTCCACTCTCACAAATTTCAACGTTAGTTTCAATTCCTTAACCGGTCCAATTCCTTCCTCCGGCGTCTTCGAGAGTCTTCATCCATCATCCTACTCCGGCAACGAAAATCTCTGCGGTCAACTTTTAGCCAAACCCTGCGCCGCCGCCACCGGAGAAAACGAACTCGAAGCTCGCCGTCAACAGCCAAAGAAAACCGCCGGCGCAATCGTTTGGATAATCGCGGCGGCGTTCGGAATCGGTCTTTTCGTTCTCGTCGCCGGTACACGTTGTTTTCATGCTAACTATAACCGCCGATTTAACGGTAACGAAACTAACTGTGAAATCGGACCGTGGAAATTAACGGCGTTTCAACGGTTAAACTTCACGGCGGACGATGTTCTCGAGTGTGTGTCAAAGTCGGATAAGATATTAGGAATGGGGTCCACTGGAACAGTTTATAAAGCAGAAATGCCAGGTGGCGAAATCATAGCCGTTAAAAAGCTCTGGTGTAAACAAAAGGAAAGTAATATAATCCGACGGAGGAGAGGAGTTTTGGCAGAAGTTGATGTATTAGGAAATGTGAGACACAGGAACATAGTGAGATTGTTAGGGTGTTGCAGTAACAGGGAATGTACAATGTTGCTATATGAGTACATGGTCAATGGTAACCTTGATGATTTGTTACATGCAAAGAATAAAGGGGGTAATATGGTAATTTGTGATTGGTATACTAGGTATAAGATAGCATTGGGTGTGGCACATGGTATTTGTTATCTTCATCATGATTGTGATCCTGTGGTTGTGCATCGAGATCTAAAACCGAGTAATATTTTATTGGACGGTGAGATGGAAGCTAGAGTTGCTGATTTTGGTGTTGCTAAATTGATTCAAACTAATGAATCTATGTCTGTTATTGCTGGATCTTATGGTTACATTGCTCCAGAATATGCTTATACACTCCAAGTTGATGAAAAGAGTGACATTTACAGTTATGGAGTAGTGTTAATGGAAATATTAAGTGGAAAACGTTCAGTGGATCAAGAATTTGGTGATGGAAACAGTATTGTGGATTGGGTTAGgtccaaaataaaaaccaaagaTGGAATTGAAGGTATATTGGACAAGAATGCAGCAGCAGGGTGTAGCACAGTAAGAGAAGAAATGATACAAATACTTAGAATTGCATTGCTATGTACAAGTCGAAATCCAGCTGATAGACCTTCAATGAGAGATGTTGTGTTGATGCTTCAAGAGGCTAAAcctaaaagaaaattgtttgaTAGTGTTGTTTTAGGTCGATGTGCTAATGACAATGTCGATGttggtggtgatggtggtgaTATTCCATTGGCTCAAAAGCCAATTATCAATGAAAGCTAG 3120 0.3881 MKPFLFFLITFSYLCQTQLPLVSSVTTTLPFQLITLLSIKSSIIDPLNHLNDWKINPSNSSPTFSNSNNHQDPIWCSWRGITCHPKTTQITSLNLSNLNLSGTISPQIRYLTTLTHLNISGNDFNGTSQTGIFQLIGLRTLDISHNSFSSTFPPGIAKLRFLRIFDAYNNNFTGPLPEELIKLPFLEQLNLGGSYFSGRIPQSYGTFKRLKFLKLSGNALEGSLPPQLGLLSELQHLEIGYNTFSGTIPIELTLLSNLTYLDISAANISGQVIPELGNLTMLETLLLFENSLSGKIPSTIGKLKFLKAIDLSENQLTGSIPPEITMLKELEDLRLMYNKLTGEIPQGIGELPKLNIFQVFNNSLSGTLPPKLGSNGLLQRLDVSTNSLQGPIPVNICKGNNLVKFNLFNNKFTNNLPLSLTNCTSLARVRIQNNNLNGSIPQTLTMLPNLTYLDLSNNNFNGEIPQEFGNLQYLNISGNSFESELPNSIWNSSNLQIFSASFSKITGQIPDFIGCKTIYKIELQGNFINGNIPWNIRDCEKLILLNLSRNNLTGIIPWEIAILPSITDVDLSQNSLTGIIPSSFNNCSTLTNFNVSFNSLTGPIPSSGVFESLHPSSYSGNENLCGQLLAKPCAAATGENELEARRQQPKKTAGAIVWIIAAAFGIGLFVLVAGTRCFHANYNRRFNGNETNCEIGPWKLTAFQRLNFTADDVLECVSKSDKILGMGSTGTVYKAEMPGGEIIAVKKLWCKQKESNIIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNRECTMLLYEYMVNGNLDDLLHAKNKGGNMVICDWYTRYKIALGVAHGICYLHHDCDPVVVHRDLKPSNILLDGEMEARVADFGVAKLIQTNESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVDQEFGDGNSIVDWVRSKIKTKDGIEGILDKNAAAGCSTVREEMIQILRIALLCTSRNPADRPSMRDVVLMLQEAKPKRKLFDSVVLGRCANDNVDVGGDGGDIPLAQKPIINES 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00939 1039 Gene3D Ribonuclease Inhibitor 397 469 IPR032675 -
Tsu06g00939 1039 Gene3D Ribonuclease Inhibitor 470 517 IPR032675 -
Tsu06g00939 1039 ProSiteProfiles Protein kinase domain profile. 718 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00939 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Tsu06g00939 1039 Pfam Protein kinase domain 720 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00939 1039 Pfam Leucine rich repeat N-terminal domain 33 83 IPR013210 -
Tsu06g00939 1039 Pfam Leucine rich repeat 425 480 IPR001611 GO:0005515
Tsu06g00939 1039 Gene3D Ribonuclease Inhibitor 295 396 IPR032675 -
Tsu06g00939 1039 SUPERFAMILY Protein kinase-like (PK-like) 721 996 IPR011009 -
Tsu06g00939 1039 SMART LRR_typ_2 563 586 IPR003591 -
Tsu06g00939 1039 SMART LRR_typ_2 327 351 IPR003591 -
Tsu06g00939 1039 SMART LRR_typ_2 135 159 IPR003591 -
Tsu06g00939 1039 SMART LRR_typ_2 207 231 IPR003591 -
Tsu06g00939 1039 SMART LRR_typ_2 279 303 IPR003591 -
Tsu06g00939 1039 SMART LRR_typ_2 447 470 IPR003591 -
Tsu06g00939 1039 Gene3D Ribonuclease Inhibitor 200 294 IPR032675 -
Tsu06g00939 1039 SUPERFAMILY L domain-like 378 626 - -
Tsu06g00939 1039 ProSitePatterns Protein kinases ATP-binding region signature. 724 747 IPR017441 GO:0005524
Tsu06g00939 1039 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 1015 - -
Tsu06g00939 1039 Gene3D Ribonuclease Inhibitor 33 199 IPR032675 -
Tsu06g00939 1039 SUPERFAMILY RNI-like 92 437 - -
Tsu06g00939 1039 Gene3D Transferase(Phosphotransferase) domain 1 799 1011 - -
Tsu06g00939 1039 SMART serkin_6 718 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g00939 1039 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 3 1015 - -
Tsu06g00939 1039 Gene3D Ribonuclease Inhibitor 518 630 IPR032675 -
Tsu06g00939 1039 Gene3D Phosphorylase Kinase; domain 1 691 798 - -
Tsu06g00939 1039 PRINTS Leucine-rich repeat signature 306 319 - -
Tsu06g00939 1039 PRINTS Leucine-rich repeat signature 447 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00939 Tsu-Chr6 8496285 8501255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00939 3 1004 Receptor kinase-like Gene Family AT1G08590 43.204 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu06g00939 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00939 - - gmx:100813189 1574.68