Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00932 ATGGACGCTCTCGATTCCAATCCTCCCATCGATCTCCCTTCCCACAACACCACCGCATCAGACTACAACAACCAATCCCAAACCCTAATTCCCGAAAACGGAAACCAATCACAAAACGGCCAAACCACCGTCACCGCCGTAGATAACAATGATTCACGTCCACATATTCACAATCCACTTCTCTCCGACAATGGTTTAACTGCCAACACTCGAAGTGGAACCGATAAGGATCAATCAGGCGGTGAAGAAGAGACAACAAGCAAACGACGTCGTCGTAGTCGATGGGATCCACAGCCAGATTCAAATGATCAGAATAGCGGCGAAACGGGTGGAACTAAGAAAAGGAAATCGCGTTGGGCTGATGATGAACCGAAACCGGTAATTCAACTTCCTGATTTTATGGGTGGTATTGAATTTGATCCTGAAATTCAAGCTTTGAATAGTAGATTACTTGAAATTAGTAGAATGTTACAATCTGGTTTACCTTTAGATGATCGTCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTATATATGATAATATGGGTATTAGAATTAATACTAGAGAGTATCGTGCTCGAGAGCGATTGCAGAAAGAAAGACAAGAAATTATATCTCAGATTATTAAGAAAAACCCGGCTTTTAAACCTCCTGCTGATTATAGACCACCAAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAGTATCCTGGTTATAATTTCATTGGGCTTATTATTGGTCCCAGGGGTAATACTCAGAAACGGATGGAGAAGGAGACTGGTGCTAAGATTGTGATTCGAGGTAAAGGGTCAGTGAAAGAAGGTAGATTGCAACAGAAGAGGGATTTGAAACCTGATCCTTCTGAGAATGAAGATTTGCATGTTTTGGTTGAGGCGGATACGGCTGATGCGCTTGAAGCTGCGGCTGGTATGGTTGAGAAGCTCTTGCAGCCTGTTGATGAGGTTTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCTGCTTTGAATGGGACGATTAGGGATGAGGAGTATTGTAGGTTGTGTGGCGAACCTGGTCATAGACAATATGCTTGTCCTACGAGGACTTCAACATTTAAGAGTGAAGTTGTTTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATAGATTGTCCGGTGAAGGGTGCTACGGGGAAGAAGATGGATGATGAGTATCAGAATTTTCTGGCTGAGTTGGGCGGTACGGTTCCTGAATCTGCAATAAAGCAAACTAGTACTTTGGCAATTGGGTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTAGTCCGGTTGGTAGTACTCCAACTCCTGGGTTAGGGGCTGGTGCAGCTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATCTGCCACCCACTCTTGAGGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCTAAAGTCATTAAGGATCGAATGACAGGATTGAGTAAAGGATACGGGTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATTGTTGCCATGAATGGTTATCGCCTTGAGGGTCGAACCATTGCAGTGAGAGTAGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCCGGCCCACCAGCGTCGGCTGTGCCCACTTATCCTGTTCAAAGCCAGCCACTTGGTGCCTATCCATCCCAACAATATACAGGTGGTGGTCCCCTTGGGAGTGCTCCTCCTGGGAGTTATGGTGGTACCCCAGTTCCTTGGGGACCTCCTATTCCTCCTCCATATTATGCTCCTCCTCCACCTGGGTCAACTATGTATCCTCCTATGCATGGTCAACCTATGCCTCCGTATGGTGTTCAATATCCTCCCATGCCAACAGGTCCCCCTGGTGCCACATCCCAGCCAGCGGCTTCTGGTGAAATGCAGCAGAATTACCCTCCTGGAGTGCAGTCTGATAATAATACGTCTACACAGTCAACCAACATGTATGGGAACACAATACCTTCAATGCCACCAGCAGCTCCACCAACATATCCTGCATCTTATGGATATCCTCCTCCACCTTACTACAATGCAGTTCCACCACCTCCCCCTCCTGCTTCAGACCAATCCCACAGCATTGCTAATGCACCTTGGGCCAGCAATCATCCTGTGCCACCTCCTCCTTCATCTGCAGATCAATCCCAAAGCATTGGAAATGCACCTATGCCTCCTCCTAACTCATCGGCGGAGAAGACATCATATGGAGCTGATTCAGAGTATGAGAAATTCATGGCAGAGATGAAATGA 2313 0.46 MDALDSNPPIDLPSHNTTASDYNNQSQTLIPENGNQSQNGQTTVTAVDNNDSRPHIHNPLLSDNGLTANTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQNSGETGGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKQTSTLAIGSGNSGSNPPWANNSSPVGSTPTPGLGAGAAKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVQSQPLGAYPSQQYTGGGPLGSAPPGSYGGTPVPWGPPIPPPYYAPPPPGSTMYPPMHGQPMPPYGVQYPPMPTGPPGATSQPAASGEMQQNYPPGVQSDNNTSTQSTNMYGNTIPSMPPAAPPTYPASYGYPPPPYYNAVPPPPPPASDQSHSIANAPWASNHPVPPPPSSADQSQSIGNAPMPPPNSSAEKTSYGADSEYEKFMAEMK 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00932 770 MobiDBLite consensus disorder prediction 570 593 - -
Tsu06g00932 770 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 226 352 IPR036612 GO:0003723
Tsu06g00932 770 SMART rrm1_1 464 537 IPR000504 GO:0003723
Tsu06g00932 770 ProSiteProfiles Zinc finger CCHC-type profile. 348 362 IPR001878 GO:0003676|GO:0008270
Tsu06g00932 770 ProSiteProfiles Zinc finger CCHC-type profile. 374 388 IPR001878 GO:0003676|GO:0008270
Tsu06g00932 770 PANTHER RNA-BINDING PROTEIN RELATED 40 770 IPR045071 -
Tsu06g00932 770 MobiDBLite consensus disorder prediction 424 447 - -
Tsu06g00932 770 SUPERFAMILY Retrovirus zinc finger-like domains 344 390 IPR036875 GO:0003676|GO:0008270
Tsu06g00932 770 Gene3D - 436 545 IPR012677 -
Tsu06g00932 770 Pfam Splicing factor 1 helix-hairpin domain 115 222 IPR032570 -
Tsu06g00932 770 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 40 770 - -
Tsu06g00932 770 SUPERFAMILY RNA-binding domain, RBD 458 551 IPR035979 GO:0003676
Tsu06g00932 770 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 463 541 IPR000504 GO:0003723
Tsu06g00932 770 Gene3D K Homology domain, type 1 218 346 IPR036612 GO:0003723
Tsu06g00932 770 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 465 534 IPR000504 GO:0003723
Tsu06g00932 770 CDD SF1_like-KH 227 343 - -
Tsu06g00932 770 MobiDBLite consensus disorder prediction 639 675 - -
Tsu06g00932 770 MobiDBLite consensus disorder prediction 271 291 - -
Tsu06g00932 770 Pfam KH domain 241 289 IPR004088 GO:0003723
Tsu06g00932 770 MobiDBLite consensus disorder prediction 625 770 - -
Tsu06g00932 770 MobiDBLite consensus disorder prediction 160 181 - -
Tsu06g00932 770 MobiDBLite consensus disorder prediction 1 129 - -
Tsu06g00932 770 SMART c2hcfinal6 373 389 IPR001878 GO:0003676|GO:0008270
Tsu06g00932 770 SMART c2hcfinal6 347 363 IPR001878 GO:0003676|GO:0008270
Tsu06g00932 770 MobiDBLite consensus disorder prediction 424 454 - -
Tsu06g00932 770 MobiDBLite consensus disorder prediction 733 756 - -
Tsu06g00932 770 Gene3D - 140 217 - -
Tsu06g00932 770 MobiDBLite consensus disorder prediction 677 710 - -
Tsu06g00932 770 MobiDBLite consensus disorder prediction 76 98 - -
Tsu06g00932 770 MobiDBLite consensus disorder prediction 10 75 - -
Tsu06g00932 770 SMART kh_6 226 318 IPR004087 GO:0003676
Tsu06g00932 770 ProSiteProfiles Type-1 KH domain profile. 241 313 - -
Tsu06g00932 770 MobiDBLite consensus disorder prediction 109 125 - -
Tsu06g00932 770 Gene3D - 347 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00932 Tsu-Chr6 8431334 8436028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00932 463 666 Eukaryotic Initiation Factors Gene Family AT3G16380 26.291 1.01e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00932 K13095 - gmx:100800982 1127.46