Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00929 ATGAATACTCCGTTTGATTTTCTCGGGTCGGTGAGTCCTGGAAGGGATTCATGGCGTTTCAAGGTTCGCGTACTTAGGTTATGGAATGTGCCCTCTTTTTTGAAGTCTGATCAATCGAACTCGATTGAGATGGTTTTGATTGATGAAAAGGGGGGTAAGATTCATGCATCTGTTCGTCGTCAGCTGGTTTATCTTTTTGGTTCGAAAATTACTGAGGGGGATGTTTATAAGATGTCGTTTTTCACGGTGTCCCCGGAATCTGGTTTGTATCGTACAACTCCTCATCCTTACAAACTTAACTTTGAGATGAAAACCAAAGTTCAGGTGTGTGAAAATCGTGAAATAGATCCATATGGTTTATCACTCACTTCAATTGGAGATGTTATTATACATGGATCTGATCATGATTTTTTAGTTGATGTCATTGTTGTGATAATTGGTATTTCTGCTGAGAGGGAGTATATTCGTGATGGAAAGGTTACTAAGATGATTGTGCTTGAGTTGACCGATAATGGTGGAAAGTGCGAGTGTGCATTGTTTGGTGGTTATGTCAAGGATCTTCAGGAGATGCTTGTGAAGAATGGTGATGCATTGCCAGTGTTTGTTATTCAGTTTGCCAAAATTAAGAATTTCGGAGGTAATGTGTCTGTTCAAAATGTTTTGAATGCTACAAGAATTTTTGTGAATCCTGATATACCAGAGGTTGTTTCTTTCAAGAAAACCTTGGCTGTTGTTGGTGTTAATTCATCTGTTTCCATACCTGCTATTGGACACCGTGTCAAGACTTCATTTGAGGATGATTTTTTGCTTAAGTATCCTAGGACTTCCATAGCTCATTTGCTTGAACTGGCCACTGATGGTATATATGTGGTTGATGGTGTTGTTGATTGTTTGGTTGAAGATGAAGACTGGTGGTTTTATGGTTCATTTAGAGTTAAGAGGATATGTGCTGATGTTGCTGTTATGAAGGCTTTTCGTGATTTGTCTGTTGATGTTGATTCTACTGGTGATGAAGAAGACAGTGTTGATGTGGATTATGTTGAGGACACTCCAGTGCAGAACTTTGTGGGTGATTTTATTGTTTCACCTTCTTCTGCTAGGGTTGGTGATGAAAGTGAAGTTTGTGGTGCTCATTTGGCTTCTGAAGTCATAGATTTGGGTGATGATTGTGGTGCTGGAGTGGAGGTTTTTGTTCCTGGGCGAGTTGATTTGGATATCAATCAAGTGTTGTCTGCGAAGCGAAATTTGTCCATTGCGTTTTCTGAATGTGATGATGTTGGAGCAAATAATTCACTTGCTTGCATTATTGGTTGTTACTATGGAGTTATTGATGGTGTTGATGTTATGTTTGATGATGAAGCTAAAATATATCcaagGTTCTCTCTTAAAGTTAATGTTGGCGATCATCTAGATGATTATGactttgttttgtatgatgAGGTTGTTAGGAAGGTGGCTCCTTTTACGTGTCTTGAATTGGAGAAAGAGgAGTTTGGTTGTGATTCGTGTGGTGCCATTTGCATTGAAATTTTGGACGTCCTCATTGATAGTGATGTAATGGCTATTTATCTTGATCAAACTCATGCTGCTTATGCCAACAATgaGAATTTAAATCAGCCAATTGATTCTAAGGTGATAGGAACCAGTGCAAGTGAGGATGATTTTAATGATTCTTCCTCTCCCATTAATGATTTTCCTTTTAAGTCAAGCTGTTCTATCTTGTATGAATTTATTGATGATACTGAAGTTAGGAAATTGAGTGATTTGTGTGGTTCAGAGGACTGTGCAAATTccattgttgttgtttga 1809 0.3759 MNTPFDFLGSVSPGRDSWRFKVRVLRLWNVPSFLKSDQSNSIEMVLIDEKGGKIHASVRRQLVYLFGSKITEGDVYKMSFFTVSPESGLYRTTPHPYKLNFEMKTKVQVCENREIDPYGLSLTSIGDVIIHGSDHDFLVDVIVVIIGISAEREYIRDGKVTKMIVLELTDNGGKCECALFGGYVKDLQEMLVKNGDALPVFVIQFAKIKNFGGNVSVQNVLNATRIFVNPDIPEVVSFKKTLAVVGVNSSVSIPAIGHRVKTSFEDDFLLKYPRTSIAHLLELATDGIYVVDGVVDCLVEDEDWWFYGSFRVKRICADVAVMKAFRDLSVDVDSTGDEEDSVDVDYVEDTPVQNFVGDFIVSPSSARVGDESEVCGAHLASEVIDLGDDCGAGVEVFVPGRVDLDINQVLSAKRNLSIAFSECDDVGANNSLACIIGCYYGVIDGVDVMFDDEAKIYPRFSLKVNVGDHLDDYDFVLYDEVVRKVAPFTCLELEKEEFGCDSCGAICIEILDVLIDSDVMAIYLDQTHAAYANNENLNQPIDSKVIGTSASEDDFNDSSSPINDFPFKSSCSILYEFIDDTEVRKLSDLCGSEDCANSIVVV 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00929 602 CDD RPA1_DBD_A_like 21 107 - -
Tsu06g00929 602 PANTHER REPLICATION FACTOR A 1, RFA1 22 347 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu06g00929 602 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Tsu06g00929 602 Gene3D - 113 251 IPR012340 -
Tsu06g00929 602 SUPERFAMILY Nucleic acid-binding proteins 120 246 IPR012340 -
Tsu06g00929 602 Pfam Domain of unknown function DUF223 43 124 IPR003871 -
Tsu06g00929 602 CDD RPA1_DBD_B_like 149 242 - -
Tsu06g00929 602 Gene3D - 7 110 IPR012340 -
Tsu06g00929 602 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00929 Tsu-Chr6 8394396 8399445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00929 8 249 Core DNA Replication Machinery Family AT5G45400 25.296 1.05e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00929 - - mtr:MTR_1g075850 314.309