Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00925 ATGGACATGAATTCAAATAATACTCCCGTTCTCACGGATACCGCTCCGATAACAAATTCAAGACTGCATGTGCATTCCAATTTGTTGCCTTATTCCCATACCGGTGCAACCTTTCCTCACGGTATGCTATTGAATATCCCGAGGAAGAAGACGGGAATTCTTGAAGATGTTTTTTCTTGTGGTTGGTTGGATGCCATGAAATCATCGTCACCTCCACCGAAGAATAGATCAAAGGATGTTAATCACGCGTTTGCATCATCTGAAGCCGATCCTTATTTTAACTGGCTGCTAAAATATCCATCGGCACTTGCATCTTTTGATCAAATTACGAACTACGCAAAAGGCAAAAGAATTGCATTGTTTTTGGACTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCGGATAATATGCGAGCTGCCGTTAAAAAAGTGGCAGAGTATTTTCCAACAGCGATAATTAGTGGAAGAAGTCGCGACAAGGTACATGAATTTGTAGGACTAACTGAACTCTATTATGCTGGTAGCCATGGAATGGACATCATTGGCCCTGTTAGACAATCTCTATCTGTATCACCTAACCACCCTAATTGCATCGTTAAGTGTACTGACAAGCAGGGAAAGAAGGTGAATTTATTCCAACCTGCTGCTGAATTCCTGCCAATGATTAATGAGGTGCTTAAGTCTCTTATTGAGTGTACAAAAGACATCAAAGGATCAAAAGTTGAGAACAATAAATTTTGTGTATCTGTACATTACCGCAATGTAGACGAGAAGAATTGGAGTTTGGTGGCGCAACGAGTTAATGATGTTCTTAAGGGCTTTCCACGTCTGCGTTTAACTCATGGTCGCAAGGTTTTAGAGGTCCGACCTGTGATTAACTGGGATAAGGGAAAAGCAGTCACATTTTTACTTGAGTCGCTTGGACTTAACAATTGTGACGACGTGCTTCCAATATATATTGGTGATGATCGTACGGATGAAGATGCATTTAAGGTTCTGAGAGAGGGAAATAAAGGTTATGGGATTTTAGTGTCTTCAGCACCGAAAGAAAGTAATGCAAGTTACTCTCTTCGTGATCCGTCTGAGGTCATGGAATTTCTTAAGTCACTTGTGTTATGGAAGCAAATCCCCTTTAAAAGCCATATATAG 1170 0.406 MDMNSNNTPVLTDTAPITNSRLHVHSNLLPYSHTGATFPHGMLLNIPRKKTGILEDVFSCGWLDAMKSSSPPPKNRSKDVNHAFASSEADPYFNWLLKYPSALASFDQITNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVHEFVGLTELYYAGSHGMDIIGPVRQSLSVSPNHPNCIVKCTDKQGKKVNLFQPAAEFLPMINEVLKSLIECTKDIKGSKVENNKFCVSVHYRNVDEKNWSLVAQRVNDVLKGFPRLRLTHGRKVLEVRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSAPKESNASYSLRDPSEVMEFLKSLVLWKQIPFKSHI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00925 389 TIGRFAM T6PP: trehalose-phosphatase 218 378 IPR003337 GO:0003824|GO:0005992
Tsu06g00925 389 Pfam Trehalose-phosphatase 121 368 IPR003337 GO:0003824|GO:0005992
Tsu06g00925 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 382 IPR044651 GO:0004805|GO:0005992
Tsu06g00925 389 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE A 1 382 - -
Tsu06g00925 389 Gene3D - 118 206 IPR023214 -
Tsu06g00925 389 Gene3D - 223 386 IPR023214 -
Tsu06g00925 389 CDD HAD_TPP 119 372 - -
Tsu06g00925 389 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 120 341 IPR006379 -
Tsu06g00925 389 SUPERFAMILY HAD-like 119 381 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00925 Tsu-Chr6 8327451 8331127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00925 112 377 Trehalose Biosynthesis Gene Families AT1G70290 25.795 1.79e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00925 K01087 - gmx:100819495 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00925 06 8327451 8331127 Tsu06g00925 06 8327451 8331127 ECH